Publications associées à Computational pipeline to probe NaV1.7 gain-of-function variants in neuropathic painful syndromes

Towards an Understanding of Hydraulic Sensitivity: Graph Theory Contributions to Water Distribution Analysis

Water distribution systems (WDSs) are complex networks with numerous interconnected junctions and pipes. The robustness and reliability of these systems are critically dependent on their network structure, necessitating detailed analysis for proactive leak ...

MDPI2024

The connection of the acyclic disconnection and feedback arc sets - On an open problem of Figueroa et al

Lukas Fritz Felix Vogl

We examine the connection of two graph parameters, the size of a minimum feedback arcs set and the acyclic disconnection. A feedback arc set of a directed graph is a subset of arcs such that after deletion the graph becomes acyclic. The acyclic disconnecti ...

Elsevier2024

Scalable maximal subgraph mining with backbone-preserving graph convolutions

Karl Aberer, Quoc Viet Hung Nguyen, Thành Tâm Nguyên, Thanh Trung Huynh

Maximal subgraph mining is increasingly important in various domains, including bioinformatics, genomics, and chemistry, as it helps identify common characteristics among a set of graphs and enables their classification into different categories. Existing ...

ELSEVIER SCIENCE INC2023

Expanding computational biochemistry towards complex and non-natural compounds

Anastasia Sveshnikova

In the beginning was the metabolism. The biochemical processes that make life possible transformed the soup of chemicals into the life on Earth we know today. Since then, living organisms have evolved, and life on Earth has become more complex. Living orga ...

EPFL2023

Metastability of the Potts Ferromagnet on Random Regular Graphs

Jean Bernoulli Ravelomanana

We study the performance of Markov chains for the q-state ferromagnetic Potts model on random regular graphs. While the cases of the grid and the complete graph are by now well-understood, the case of random regular graphs has resisted a detailed analysis ...

SPRINGER2023

GRAMM: Fast CGRA Application Mapping Based on A Heuristic for Finding Graph Minors

Mirjana Stojilovic, Guanglei Zhou

A graph H is a minor of a second graph G if G can be transformed into H by two operations: 1) deleting nodes and/or edges, or 2) contracting edges. Coarse-grained reconfigurable array (CGRA) application mapping is closely related to the graph minor problem ...

Los Alamitos2023

Space-Efficient Representations of Graphs

Jakab Tardos

With the increasing prevalence of massive datasets, it becomes important to design algorithmic techniques for dealing with scenarios where the input to be processed does not fit in the memory of a single machine. Many highly successful approaches have emer ...

EPFL2022

Unambiguous DNFs and Alon-Saks-Seymour

Mika Tapani Göös, Siddhartha Jain

We exhibit an unambiguous k-DNF formula that requires CNF width (Omega) over tilde (k(2)), which is optimal up to logarithmic factors. As a consequence, we get a near-optimal solution to the Alon-Saks-Seymour problem in graph theory (posed in 1991), which ...

IEEE COMPUTER SOC2022

Random walks and forbidden minors III: poly(d epsilon(-1))-time partition oracles for minor-free graph classes

Akash Kumar

Consider the family of bounded degree graphs in any minor-closed family (such as planar graphs). Let d be the degree bound and n be the number of vertices of such a graph. Graphs in these classes have hyperfinite decompositions, where, one removes a small ...

IEEE COMPUTER SOC2022

Graph Neural Networks With Lifting-Based Adaptive Graph Wavelets

Pascal Frossard, Chenglin Li, Mingxing Xu

Spectral-based graph neural networks (SGNNs) have been attracting increasing attention in graph representation learning. However, existing SGNNs are limited in implementing graph filters with rigid transforms and cannot adapt to signals residing on graphs ...

IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC2022

On the robustness of the metric dimension of grid graphs to adding a single edge

Patrick Thiran, Gergely Odor, Satvik Mehul Mashkaria

The metric dimension (MD) of a graph is a combinatorial notion capturing the minimum number of landmark nodes needed to distinguish every pair of nodes in the graph based on graph distance. We study how much the MD can increase if we add a single edge to t ...

2022

Distributed Graph Learning With Smooth Data Priors

Pascal Frossard, Isabela Cunha Maia Nobre, Mireille El Gheche

Graph learning is often a necessary step in processing or representing structured data, when the underlying graph is not given explicitly. Graph learning is generally performed centrally with a full knowledge of the graph signals, namely the data that live ...

IEEE2022

Graph Embedding for Retrieval

Chi Thang Duong

Information retrieval (IR) systems such as search engines are important for people to find what they need among the tremendous amount of data available in their organization or on the Internet. These IR systems enable users to search in a large data collec ...

EPFL2022

Graph Representation Learning with Optimal Transport: Analysis and Applications

Effrosyni Simou

In several machine learning settings, the data of interest are well described by graphs. Examples include data pertaining to transportation networks or social networks. Further, biological data, such as proteins or molecules, lend themselves well to graph- ...

EPFL2022

Data-driven and Safe Networked Control with Applications to Microgrids

Mustafa Sahin Turan

Today, automatic control is integrated into a wide spectrum of real-world systems such as electrical grids and transportation networks. Many of these systems comprise numerous interconnected agents, perform safety-critical operations, or generate large amo ...

EPFL2022

Atomic subgraphs and the statistical mechanics of networks

Sofia Charlotta Olhede

We develop random graph models where graphs are generated by connecting not only pairs of vertices by edges, but also larger subsets of vertices by copies of small atomic subgraphs of arbitrary topology. This allows for the generation of graphs with extens ...

2021

iPool--Information-Based Pooling in Hierarchical Graph Neural Networks

Pascal Frossard, Chenglin Li, Xing Gao

With the advent of data science, the analysis of network or graph data has become a very timely research problem. A variety of recent works have been proposed to generalize neural networks to graphs, either from a spectral graph theory or a spatial perspec ...

IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC2022

Cell-type-specific nicotinic input disinhibits mouse barrel cortex during active sensing

Carl Petersen, Sylvain Crochet, Célia Roxane Gasselin, Benoît Hohl

Fast synaptic transmission relies upon the activation of ionotropic receptors by neurotransmitter release to evoke postsynaptic potentials. Glutamate and GABA play dominant roles in driving highly dynamic activity in synaptically connected neuronal circuit ...

CELL PRESS2021

NICEpath: Finding metabolic pathways in large networks through atom-conserving substrate-product pairs

Vassily Hatzimanikatis, Jasmin Maria Hafner

Motivation: Finding biosynthetic pathways is essential for metabolic engineering of organisms to produce chemicals, biodegradation prediction of pollutants and drugs, and for the elucidation of bioproduction pathways of secondary metabolites. A key step in ...

OXFORD UNIV PRESS2021

Efficient Streaming Subgraph Isomorphism with Graph Neural Networks

Karl Aberer, Quoc Viet Hung Nguyen, Chi Thang Duong, Trung-Dung Hoang

Queries to detect isomorphic subgraphs are important in graph-based data management. While the problem of subgraph isomorphism search has received considerable attention for the static setting of a single query, or a batch thereof, existing approaches do n ...

ASSOC COMPUTING MACHINERY2021