Publications by Daniel Sage | EPFL Graph Search

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In analogy with steerable wavelets, we present a general construction of adaptable tight wavelet frames, with an emphasis on scaling operations. In particular, the derived wavelets can be "dilated" by a procedure comparable to the operation of steering ste ...

The “Marr wavelet pyramid” is a wavelet decomposition that implements a multiscale version of the complex gradient-Laplace operator. It is closely linked to a multiresolution analysis of

L _{ 2 }

(\mathbb{R} ^{ 2 }

) and it has a fast filterbank im ...

Image processing is getting more and more important because of the widespread use of digital imaging devices, such as digital cameras or digital videos. While image processing is a very practical discipline, it is perceived as being rather theoretical. It ...

We have designed a series of computer sessions build around ImageJ (a public-domain software for image analysis), as a practical complement to a two-semester course in image processing. The students are challenged with simple practical imaging problems as they acquire hands-on practice by experimenting with image-processing operators. In the process, they also learn how to program standard image-processing algorithms in Java. This is made possible thanks to a programmer-friendly environment and a software i

While Single Molecule Localization Microscopy (SMLM) aims to generate precise coordinates of molecular targets in cells, the resulting point clouds are inherently blurred by additive noise sources across the experimental, imaging, and processing workflow. This blurring often limits SMLM's ability to accurately quantify complex assembled structures required to address biological issues, despite reported localization precision down to a couple of nanometers. Here, we present SMLMFlow, a machine learning frame

A new method based on the Young-Laplace equation for measuring contact angles and surface tensions is presented. In this approach, a first-order perturbation technique helps to analytically solve the Young-Laplace equation according to photographic images ...

We describe a texture classification system that identifies lung tissue patterns from high-resolution computed tomography (HRCT) images of patients affected with interstitial lung diseases (ILD). This pattern recognition task is part of an image-based diag ...

We present a new, robust, computational procedure for tracking fluorescent markers in time-lapse microscopy. The algorithm is optimized for finding the time-trajectory of single particles in very noisy dynamic (two- or three-dimensional) image sequences. I ...

Mechanical properties of the adventitia are largely determined by the organization of collagen fibers. Measurements on the waviness and orientation of collagen, particularly at the zero-stress state, are necessary to relate the structural organization of c ...

Discharges of combined sewer overflows (CSOs) and stormwater are recognized as an important source of environmental contamination. However, the harsh sewer environment and particular hydraulic conditions during rain events reduce the reliability of traditi ...

Single-molecule localization microscopy (SMLM) is a popular microscopic technique that achieves super resolution imaging by localizing individual blinking molecules in thousands of frames. Therefore, the reconstructed high-resolution image is a combination ...

Aging affects elastin, a key component of the arterial wall integrity and functionality. Elastin degradation in cerebral vessels is associated with cerebrovascular disease. The goal of this study is to assess the biomechanical properties of human cerebral ...

This study investigates and models the grinding process of single crystal sapphire. Five parameters: the wheel speed, the feed speed, the vertical feed, the ultrasonic assistance and the crystallographic direction were considered via a design of experiment ...

Microscopy imaging often suffers from limited depth-of-focus. However, the specimen can be “optically sectioned” by moving the object along the optical axis; different areas appear in focus in different images. Extended depth-of-focus is a fusion algorithm that combines those images into one single sharp composite. One promising method is based on the wavelet transform. In this paper, we show how the wavelet-based image fusion technique can be improved and easily extended to multi-channel data. First, we pr

Motivation: Rotated template matching is an efficient and versatile algorithm to analyze microscopy images, as it automates the detection of stereotypical structures, such as organelles that can appear at any orientation. Its performance however quickly de ...

The field of biological imaging has evolved considerably during the past decade as a result of recent (r)evolutions in fluorescence labeling and optical microscopy. Bioimage informatics has been identified as a top priority to cope with the ever-increasing ...

GlobalBioIm is an open-source MATLAB (R) library for solving inverse problems. The library capitalizes on the strong commonalities between forward models to standardize the resolution of a wide range of imaging inverse problems. Endowed with an operator-al ...

Super-resolution structured-illumination microscopy (SIM) is a powerful technique that allows one to surpass the diffraction limit by up to a factor two. Yet, its practical use is hampered by its sensitivity to imaging conditions which makes it prone to re ...

Microscopy imaging often suffers from limited depth-of-field. However, the specimen can be “optically sectioned” by moving the object along the optical axis. Then different areas appear in focus in different images. Extended depth-of-field is a fusion algorithm that combines those images into one single sharp composite. One promising method is based on the wavelet transform. Here, we show how the wavelet-based image fusion technique can be improved and easily extended to multichannel data. First, we propose

The 32 telomeres in the budding yeast genome cluster in three to seven perinuclear foci. Although individual telomeres and telomeric foci are in constant motion, preferential juxtaposition of some telomeres has been scored. To examine the principles that g ...

Daniel Sage

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On the Continuous Steering of the Scale of Tight Wavelet Frames

The Marr Wavelet Pyramid and Multiscale Directional Image Analysis

IP-LAB: A Tool to Teach Image Processing Programming in Java—Challenge in Swiss Federal Institute of Technology Lausanne

Easy Java Programming for Teaching Image Processing

SMLMFlow: Improving Structural Resolution in Single Molecule Localization Microscopy with Flow Matching

Low-Bond Axisymmetric Drop Shape Analysis for Surface Tension and Contact Angle Measurements of Sessile Drops

Lung Tissue Classification Using Wavelet Frames

Automatic Tracking of Individual Fluorescence Particles: Application to the Study of Chromosome Dynamics

Experimental investigation of collagen waviness and orientation in the arterial adventitia using confocal laser scanning microscopy

Flow Measurements in Sewer Systems Based on Image Analysis: Automatic Flow Velocity Algorithm

Closed-Form Expression of the Fourier Ring-Correlation for Single-Molecule Localization Microscopy

Effect of aging on elastin functionality in human cerebral arteries

Parametric Experimental Study and Design of Experiment Modelling of Sapphire Grinding

Extended Depth-of-Focus for Multi-Channel Microscopy Images: A Complex Wavelet Approach

Steer'n'Detect: fast 2D template detection with accurate orientation estimation

Advanced Image Processing for Biology, and the Open Bio Image Alliance (OBIA)

Pocket guide to solve inverse problems with GlobalBioIm

Surpassing light inhomogeneities in structured-illumination microscopy with FlexSIM

Complex Wavelets for Extended Depth-of-Field: A New Method for the Fusion of Multichannel Microscopy Images

Controlled Exchange of Chromosomal Arms Reveals Principles Driving Telomere Interactions in Yeast