Publications associées à Pde-Constrained Optimization For Nuclear Mechanics

Control of nuclear envelope dynamics during acute ER stress by LINC complexes disassembly and selective, asymmetric autophagy of the outer nuclear membrane

The endoplasmic reticulum (ER) extends to the outer (ONM) and the inner (INM) nuclear membrane forming the nuclear envelope (NE) that delimits the nucleoplasm containing the cell genome. Unfolded protein responses (UPRs) and reticulophagy responses increas ...

Taylor & Francis Inc2024

Dynamics of CLIMP-63 S-acylation control ER morphology

Kathryn Hess Bellwald, Béatrice Kunz, Graham Knott, Françoise Gisou van der Goot Grunberg, Laurence Gouzi Abrami, Vassily Hatzimanikatis, Patrick Alain Sandoz, Robin Alexander Denhardt-Eriksson, Sylvia Ho, Luciano Andres Abriata, Catherine Maclachlan, Gard Spreemann

A key player in the formation of endoplasmic reticulum sheets is CLIMP-63, but mechanistic details remained elusive. Here authors combined cellular experiments and mathematical modelling to show that S-acylation of CLIMP-63 regulates its function by mediat ...

Nature Portfolio2023

Data-driven 1D wave propagation for site response analysis

Jean-François Molinari, Sacha Zenon Wattel, Antonio Joaquin Garcia Suarez

Prediction of ground motion triggered by earthquakes is a prime concern for both the seismology community and geotechnical earthquake engineering one. The subfield occupied with such a problem is termed site response analysis (SRA), its one-dimensional fla ...

WILEY2023

Landscapes of DNA Mechanics and Genomes

Thomas Antonin Zwahlen

The local physical properties - such as shape and flexibility - of the DNA double-helix is today widely believed to be influenced by nucleic acid sequence in a non-trivial way. Furthermore, there is strong evidence that these properties play a role in many ...

EPFL2023

Exploring the mechanisms governing nuclear cGAS localization and activity

Marilena Wischnewski

Recognition of pathogen-derived molecules through germline-encoded receptors is a fundamental principle of innate immunity. Pattern recognition receptors detect specific intracellular danger signals to trigger potent immune responses. The DNA sensor cyclic ...

EPFL2022

Data-driven numerical site response

Jean-François Molinari, Sacha Zenon Wattel, Antonio Joaquin Garcia Suarez

Prediction of ground motion triggered by earthquakes is a prime concern for both the seismology community and geotechnical earthquake engineering one. The subfield occupied with such a problem is termed site response analysis (SRA), its one-dimensional fla ...

2022

Development of a semi-implicit contact methodology for finite volume stress solvers

Andreas Pautz, Alessandro Scolaro, Carlo Fiorina

The past decades have seen numerous efforts to apply the finite volume methodology to solid mechanics problems. However, only limited work has been done by the finite volume community toward the simulation of mechanical contact. In this article, we present ...

Wiley2022

Seeing and Touching the Mycomembrane at the Nanoscale

John McKinney, Georg Fantner

Mycobacteria have unique cell envelopes, surface properties and growth dynamics, which all play a part in the ability of these important pathogens to infect, evade host immunity, disseminate and to resist antibiotic challenges. Recent atomic force microsco ...

American Society for Microbiology2021

Mechanical principles of engineering fibrous tissues with programmable shape

Erik Mailand

The form and structure of biological tissues define their function. The emergence of tissue morphology during development is one of the wonders of nature. Cells mechanically probe and manipulate their surroundings while constructing structures from the ext ...

EPFL2021

Computational micromechanics of porous brittle solids

Henning Löwe, Johan Alexandre Philippe Gaume, Lars Kristoffer Uhlen Blatny, Stephanie Wang

Porous brittle solids evidence complex mechanical behavior, where localized failure patterns originate from mechanical processes on the microstructural level. In order to investigate the failure mechanics of porous brittle solids, we outline a general stoc ...

2021

Multi-scale model for coupled piezoelectric-inelastic behavior

Dragan Damjanovic

In this work, we present the development of a 3D lattice-type model at microscale based upon the Voronoi-cell representation of material microstructure. This model can capture the coupling between mechanic and electric fields with non-linear constitutive b ...

TECHNO-PRESS2021

Spatial control of nucleoporin condensation by fragile X-related proteins

Alessandro Berto

Nucleoporins (Nups) build highly organized nuclear pore complexes (NPCs) at the nuclear envelope (NE). Several Nups assemble into a sieve-like hydrogel within the central channel of the NPCs. In the cytoplasm, the soluble Nups exist, but how their assembly ...

WILEY2020

Torsin ATPases influence chromatin interaction of the Torsin regulator LAP1

Rudolf Hovius, Beat Fierz

The inner nuclear membrane is functionalized by diverse transmembrane proteins that associate with nuclear lamins and/or chromatin. When cells enter mitosis, membrane-chromatin contacts must be broken to allow for proper chromosome segregation; yet how thi ...

2020

Nuclear Quantum Effects: Fast and Accurate

Venkat Kapil

Atomistic simulations are a bottom up approach that predict properties of materials by modelling the quantum mechanical behaviour of all electrons and nuclei present in a system. These simulations, however, routinely assume nuclei to be classical particles ...

EPFL2020

Organelle-specific targeting of polymersomes into the cell nucleus

Zekiye Pelin Güven

Organelle-specific nanocarriers (NCs) are highly sought after for delivering therapeutic agents into the cell nucleus. This necessitates nucleocytoplasmic transport (NCT) to bypass nuclear pore complexes (NPCs). However, little is known as to how comparabl ...

National Academy of Sciences2020

Propagation of fluid driven fractures in transversely isotropic material

Fatima-Ezzahra Moukhtari

The propagation of fluid driven fractures is used in a number of industrial applications (well stimulation of unconventional reservoirs, development of deep geothermal systems) but also occurs naturally (magmatic dyke intrusion). While the mechanics of hyd ...

EPFL2020

Model order reduction for large-scale structures with local nonlinearities

Jan Sickmann Hesthaven, Mengwu Guo, Zhenying Zhang

In solid mechanics, linear structures often exhibit (local) nonlinear behavior when close to failure. For instance, the elastic deformation of a structure becomes plastic after being deformed beyond recovery. To properly assess such problems in a real-life ...

ELSEVIER SCIENCE SA2019

Premature activation of Cdk1 leads to mitotic events in S phase and embryonic lethality

Patricia Renck Nunes, João Pedro de Matos Rodrigues

Cell cycle regulation, especially faithful DNA replication and mitosis, are crucial to maintain genome stability. Cyclin-dependent kinase (CDK)/cyclin complexes drive most processes in cellular proliferation. In response to DNA damage, cell cycle surveilla ...

Springer2019

Stiffness, force and drift capacity of in-plane loaded modern unreinforced brick masonry walls

Bastian Valentin Wilding

In countries of low to moderate seismicity, such as Switzerland, unreinforced masonry (URM) is mainly used in residential buildings due to its good insulation capacity and fire resistance along with a fair compressive strength. URM walls however show a lim ...

EPFL2018

Hydro-mechanical characterization of gas shales and Opalinus Clay shale in partially saturated conditions

Alberto Minardi

An experimental study on the behaviour of shales in partially water saturated conditions is presented in this thesis. The Opalinus Clay shale and gas shales from different unconventional reservoirs have been studied. Opalinus Clay is currently considered a ...

EPFL2018