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Luciano Andres Abriata

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Publications associées (63)

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Active Site-Induced Evolutionary Constraints Follow Fold Polarity Principles in Soluble Globular Enzymes

Matteo Dal Peraro, Luciano Andres Abriata

A recent analysis of evolutionary rates in >500 globular soluble enzymes revealed pervasive conservation gradients toward catalytic residues. By looking at amino acid preference profiles rather than evolutionary rates in the same data set, we quantified th ...

OXFORD UNIV PRESS2019

Dynamics of CLIMP-63 S-acylation control ER morphology

Vassily Hatzimanikatis, Françoise Gisou van der Goot Grunberg, Graham Knott, Kathryn Hess Bellwald, Luciano Andres Abriata, Laurence Gouzi Abrami, Patrick Alain Sandoz, Catherine Maclachlan, Béatrice Kunz, Sylvia Ho, Gard Spreemann, Robin Alexander Denhardt-Eriksson

A key player in the formation of endoplasmic reticulum sheets is CLIMP-63, but mechanistic details remained elusive. Here authors combined cellular experiments and mathematical modelling to show that S-acylation of CLIMP-63 regulates its function by mediat ...

Nature Portfolio2023

The Nobel Prize in Chemistry: past, present, and future of AI in biology

Luciano Andres Abriata

The work by Hassabis and Jumper on protein structure prediction together with Baker's supremacy in de novo protein design set the stage for a future where AI not only deciphers biology at the atomic level but also designs new molecules for biotechnology, m ...

NATURE PORTFOLIO2024

A coiled coil switch mediates cold sensing by the thermosensory protein DesK

Matteo Dal Peraro, Luciano Andres Abriata, Thomas Lemmin

The thermosensor histidine kinase DesK from Bacillus subtilis senses changes in membrane fluidity initiating an adaptive response. Structural changes in DesK have been implicated in transmembrane signaling, but direct evidence is still lacking. On the basi ...

Wiley-Blackwell2015

All-atom simulations of crowding effects on ubiquitin dynamics

Matteo Dal Peraro, Luciano Andres Abriata, Enrico Spiga

It is well-known that crowded environments affect the stability of proteins, with strong biological and biotechnological implications; however, beyond this, crowding is also expected to affect the dynamic properties of proteins, an idea that is hard to pro ...

Iop Publishing Ltd2013

A dimerization interface mediated by functionally critical residues creates interfacial disulfide bonds and copper sites in CueP

Matteo Dal Peraro, Luciano Andres Abriata

CueP confers bacterial copper resistance in the periplasm, particularly under anaerobic conditions, through an unknown mechanism. The only available structure and limited solution data suggest that CueP forms noncovalent timers in solution, whereas sequenc ...

Elsevier Science Inc2014

Democratizing interactive, immersive experiences for science education with WebXR

Matteo Dal Peraro, Luciano Andres Abriata, Fabio Jose Cortes Rodriguez

SPRINGERNATURE2021

Structural mechanism of mitochondrial membrane remodelling by human OPA1

Matteo Dal Peraro, Luciano Andres Abriata

Distinct morphologies of the mitochondrial network support divergent metabolic and regulatory processes that determine cell function and fate1-3. The mechanochemical GTPase optic atrophy 1 (OPA1) influences the architecture of cristae and catalyses the fus ...

Nature Portfolio2023

A minimalistic cyclic ice-binding peptide from phage display

Harm-Anton Klok, Luciano Andres Abriata, Xudong Kong, Corey Alfred Stevens

Developing molecules that emulate the properties of naturally occurring ice-binding proteins (IBPs) is a daunting challenge. Rather than relying on the (limited) existing structure–property relationships that have been established for IBPs, here we report ...

Nature Research2021

Investigating Crosstalk Among PTMs Provides Novel Insight Into the Structural Basis Underlying the Differential Effects of Nt17 PTMs on Mutant Httex1 Aggregation

Hilal Lashuel, Matteo Dal Peraro, Luciano Andres Abriata, Anass Chiki, Lucien Fabrice Krapp, Rajasekhar Kolla, Zhidian Zhang, Driss Boudeffa

Post-translational modifications (PTMs) within the first 17 amino acids (Nt17) of the Huntingtin protein (Htt) have been shown to inhibit the aggregation and attenuate the toxicity of mutant Htt proteins in vitro and in various models of Huntington’s disea ...

2021

Site-Specific Phosphorylation of Huntingtin Exon 1 Recombinant Proteins Enabled by the Discovery of Novel Kinases

Hilal Lashuel, Luciano Andres Abriata, Anass Chiki, Jonathan Jean-Pierre Ricci, Ramanath Narayana Hegde, Driss Boudeffa, Andreas Reif

Post-translational modifications (PTMs) within the first 17 amino acids (Nt17) of exon 1 of the Huntingtin protein (Httex1) play important roles in modulating its cellular properties and functions in health and disease. In particular, phosphorylation of th ...

2020

MolecularWebXR: Multiuser discussions in chemistry and biology through immersive and inclusive augmented and virtual reality

Eva Maria Schier, Danaé Axelle Terrien-Ferey, Matteo Dal Peraro, Luciano Andres Abriata, Fabio Jose Cortes Rodriguez, Fernando Augusto Teixeira Pinto Meireles

MolecularWebXR is a new web-based platform for education, science communication and scientific peer discussion in chemistry and biology, based on modern web-based Virtual Reality (VR) and Augmented Reality (AR). With no installs as it is all web-served, Mo ...

2025

De novo protein design enables the precise induction of RSV-neutralizing antibodies

Bruno Emanuel Ferreira De Sousa Correia, Luciano Andres Abriata, Elisa Oricchio, Jaume Bonet Martinez, Sandrine Madeleine Suzanne Georgeon, Stéphane Rosset, Fabian Sesterhenn, Che Yang, Sabrina Susan Vollers, Elie Charles Eugène Dheilly, Patricia Corthésy Henrioud, Mélanie Evelyne Villard

De novo protein design has been successful in expanding the natural protein repertoire. However, most de novo proteins lack biological function, presenting a major methodological challenge. In vaccinology, the induction of precise antibody responses remain ...

American Association for the Advancement of Science2020

Detection and sequence/structure mapping of biophysical constraints to protein variation in saturated mutational libraries and protein sequence alignments with a dedicated server(vol 1, 242, 2016)

Matteo Dal Peraro, Luciano Andres Abriata, Christophe Bovigny

2016

Utilization of NMR spectroscopy to study biological fluids and metabolic processes: Two introductory activities

Luciano Andres Abriata

This work describes two activities designed to introduce students into the use of NMR spectroscopy for the analysis of biological fluids. In the first activity, 1H spectra of common beverages are acquired and analyzed to identify their most abundant consti ...

Wiley-Blackwell2012

A further leap of improvement in tertiary structure prediction in CASP13 prompts new routes for future assessments

Matteo Dal Peraro, Luciano Andres Abriata, Giorgio Elikem Tamo

We present our assessment of tertiary structure predictions for hard targets in Critical Assessment of Structure Prediction round 13 (CASP13). The analysis includes (a) assignment and discussion of best models through scores-aided visual inspection of mode ...

WILEY2019

Detection and sequence/structure mapping of biophysical constraints to protein variation in saturated mutational libraries and protein sequence alignments with a dedicated server

Matteo Dal Peraro, Luciano Andres Abriata, Christophe Bovigny

Background: Protein variability can now be studied by measuring high-resolution tolerance-to-substitution maps and fitness landscapes in saturated mutational libraries. But these rich and expensive datasets are typically interpreted coarsely, restricting d ...

2016

Updates on moleculARweb, the Swiss Portal for Chemistry and Structural Biology Education Using Augmented and now also Virtual Reality

Luciano Andres Abriata, Fabio Jose Cortes Rodriguez

We present a new activity on the moleculARweb plat-form on molecular symmetry elements, two more languages, a new marker-less augmented reality mode, and a new virtual reality tool for VR headsets. ...

SWISS CHEMICAL SOC2023

Ligand Binding to the Collagen VI Receptor Triggers a Talin-to-RhoA Switch that Regulates Receptor Endocytosis

Matteo Dal Peraro, Françoise Gisou van der Goot Grunberg, Luciano Andres Abriata, Laurence Gouzi Abrami, Béatrice Kunz, Shixu Yan

Capillary morphogenesis gene 2 (CMG2/ANTXR2) is a cell surface receptor for both collagen VI and anthrax toxin. Biallelic loss-of-function mutations in CMG2 lead to a severe condition, hyaline fibromatosis syndrome (HFS). We have here dissected a network o ...

Cell Press - Elsevier2020

The role of PTM crosstalks in Httex1 structure, aggregation and membrane interaction

Hilal Lashuel, Matteo Dal Peraro, Luciano Andres Abriata, Anass Chiki, Lucien Fabrice Krapp, Rajasekhar Kolla, Charlotte Julie Caroline Gehin, Zhidian Zhang, Driss Boudeffa

CELL PRESS2022