Johanni Michael BreaEnseignement et PhD Doctorant·es actuel·les Aude Maier, Lucas Louis Gruaz, Flavio Martinelli Cours Biological data science II : machine learning BIO-322 Les étudiants comprennent les concepts et méthodes de base d'apprentissage automatique. Ils savent les décrire en termes mathématiques et ils savent les appliquer aux données en utilisant un langage de haut niveau (julia/python/R). Intelligence artificielle et société HUM-286 Ce cours intègre les SHS avec les sciences de l'
Anne-Laure Mahul MellierExpertise
Cellular Biology: Cell culture of mammalian cell lines (U2OS, N2a, M17, SH-S5Y5, Cos, HeLa, HEK, MCF7), Astrocytic and neuronal primary cultures (hippocampus, cortex, striatum, midbrain) from P0 mouse or rat pups or from E16-E19 mice embryos, iPSC neuronal cultures (proliferation, passaging, differentiation in iNeurons or iDopaminergic neurons), Cellular transfection (DNA plasmid, siRNA, shRNA), Lentiviruses production and infection of neuronal primary cultures or mammalian cell lines, Samples pre
Jan Sickmann HesthavenProf. Hesthaven received an M.Sc. in computational physics from the Technical University of Denmark (DTU) in August 1991. During the studies, the last 6 months of 1989 was spend at JET, the european fusion laboratory in Culham, UK. Following graduation, he was awarded a 3 year fellowship to begin work towards a Ph.D. at Riso National Laboratory in the Department of Optics and Fluid Dynamics. During the 3 years of study, the academic year of 1993-1994 was spend in the Division of Applied Mathematics at Brown University and three 3 months during the summer of 1994 in Department of Mathematics and Statistics at University of New Mexico. In August 1995, he recieved a Ph.D. in Numerical Analysis from the Institute of Mathematical Modelling (DTU). Following graduation in August 1995, he was awarded an NSF Postdoctoral Fellowship in Advanced Scientific Computing and was approinted Visiting Assistant Professor in the Division of Applied Mathematics at Brown University. In December of 1996, he was appointed consultant to the Institute of Computer Applications in Science and Engineering(ICASE) at NASA Langley Research Center (NASA LaRC). As of July 1999, he was appointed Assistant Professor of Applied Mathematics, in September 2000 he was awarded an Alfred P. Sloan Fellowship, as of July 2001 he was awarded a Manning Assistant Professorship, and in March 2002, he was awarded an NSF Career Award. In January 2003, he was promoted to Associate Professor of Applied Mathematics with tenure and in May 2004 he was awarded Philip J. Bray Award for Excellence in Teaching in the Sciences (the highest award given for teaching excellence in all sciences at Brown University). He was promoted to Professor of Applied Mathematics as of July 2005. From October 2006 to June 2013, he was the Founding Director of the Center for Computation and Visualization (CCV) at Brown University. As of October 2007, he holds the (honorary) title of Professor (Adjunct) at the Technical University of Denmark. In November 2009, he successfully defended his dr.techn thesis at the Technical University of Denmark and was rewarded the degree of Doctor Technices -- the highest academic distinction awarded based on ... substantial and lasting contributions that has helped to move the research area forward and penetrated into applications. As grant Co-PI he served from Aug 2010 to June 2013 as Deputy Director of the Institute of Computational and Experimental Research in Mathematics (ICERM), the newest NSF Mathematical Sciences Research Institute. After having spend his entire academic career at Brown University, Prof Hesthaven decided to pursue new challenges and joined the Mathematics Institute of Computational Science and Engineering (MATHICSE) at Ecole Polytechnique Fédérale de Lausanne (EPFL) in Switzerland in July 2013. In March 2014 he was elected SIAM Fellow for contributions to high-order methods for partial differential equations.
Olivier CanévetEnseignement et PhD Cours Machine Learning for Engineers EE-613
Bruno Emanuel Ferreira De Sousa CorreiaThroughout my PhD and postdoctoral studies I was trained in world-renowned laboratories and institutions in the United States of America (University of Washington and The Scripps Research Institute). Very early in my scientific career I found out my fascination about protein structure and function. My PhD studies evolved in the direction of immunogen design and vaccine engineering which sparked my interest in the many needs and opportunities in vaccinology and translational research. My efforts resulted in an enlightening piece of work where for the first time, computationally designed immunogens elicited potent neutralizing antibodies. During my postdoctoral studies I joined a chemical biology laboratory at the Scripps Research Institute. In this stage I developed novel chemoproteomics methods for the identification of protein-small molecule interaction sites in complex proteomes. In March 2015, I joined the École Polytechnique Fédérale de Lausanne (EPFL) – Switzerland as a tenure track assistant professor. The focus of my research group is to develop computational tools for protein design with particular emphasis in applying these strategies to immunoengineering (e.g. vaccine and cancer immunotherapy). The activities in my laboratory focus on computational design methods development and experimental characterization of the designed proteins. Our laboratory has been awarded with 2 prestigious research grants from the European Research Council. Lastly, I have been awarded the prize for best teacher of Life sciences in 2019.
Fosco BernasconiBio I am a neuroscientist, interested in consciousness. I obtained a Ph.D. in neuroscience with Stéphanie Clarke & Lucas Spierer in Lausanne (Switzerland) in 2012. I then worked with Franz X Vollenweider in Zurich (Switzerland), and Niko A Busch in Berlin (Germany). Since 2014, I am working with Olaf Blanke at the EPFL & école polytechnique fédérale de Lausanne in Geneva. Currently, we investigate the role of altered (bodily) self-consciousness in aberrant perceptions, notably observed in psychiatric and n
Maria BrbicMaria Brbic is an assistant professor in computer science at EPFL. Prior to joining EPFL, Maria was a postdoctoral researcher in Computer Science at Stanford University working with Jure Leskovec. She received her PhD degree from University of Zagreb in 2019, while also researching at Stanford University and University of Tokyo. Her research was awarded with the Fulbright Scholarship, L’Oreal UNESCO for Women in Science Scholarship, Branimir Jernej award for outstanding publication in biology and biomedicine, and Josip Loncar Silver Plaque award for the best doctoral dissertation. She has been named a Rising Star in EECS by MIT in 2021. Her research is focused on developing new machine learning methods and applying her methods to advance biomedical research.
Jean-Paul Richard KneibEnseignement et PhD Doctorant·es actuel·les Oliver Pineda Suarez, Robert Daniel Kincaid, Ethan Daniel Tregidga, Belén Yu Irureta-Goyena Chang, Elisabeth Andréa Cécile Rachith, Shengyu He, Aurélien Thomas Mathieu Verdier, Timour Jestin A dirigé les thèses EPFL de Markus Rexroth, Luzius Gregor Kronig, Christoph Ernst René Schäfer, Vasileios Angelopoulos, Michaël Juillard, Amélie Tamone, Andrei Variu, Yoan Rappaz, Anne-Marlene Rüede, Jiaxi Yu, Daniel Felipe Forero Sanchez, Beauchesne Benjamin Emmanuel Nicola
Berend SmitEnseignement et PhD Doctorant·es actuel·les Anastasia Blokhina, Raluca-Ana Kessler, Seyed Amirmohammad Elahi, Juliette Veronique Schleicher, Yutao Li, Xin Jin, Sara Bassetta, Beatriz Bueno Mouriño A dirigé les thèses EPFL de Samantha Lynn Anderson, Daniele Ongari, Andrzej Gladysiak, Seyedmohamad Moosavi, Arunraj Chidambaram, Bardiya Valizadeh, Stavroula Kampouri, Fatmah Ebrahim, Fatma Pelin Uran, Andres Adolfo Ortega Guerrero, Kevin Maik Jablonka, Elias Moubarak, Sauradeep Majumdar, Miriam Jasmin Pougin,
Amaury Pierre Jiezhi WeiExpertise
Deep Learning, Computer Vision, Physics Informed Machine Learning, Graph Neural Networks
Amaury a obtenu son Master en Robotique de l'Ecole Polytechnique Federale de Lausanne (EPFL) en 2021. Avant de rejoindre IMOS, il a travaillé pendant plusieurs années en tant que Software Engineer chez Logitech Europe S.A. dans le domaine de la Réalité Virtuelle et Augmentée. Il a développé des algorithmes de 6DoF tracking pour appareils portables, développé le firmware et conçu la stratégie de testing industr
Quentin BarraudExpertise
Translational neuroscience · Neuromodulation · Spinal cord injury & Parkinson’s disease · Multi-omics (single-cell, spatial transcriptomics, 3D cleared-tissue imaging) · Preclinical platform management · Swiss animal research regulation
Mission
To develop, coordinate, and supervise the preclinical activities of .NeuroRestore at EPFL, integrating innovative neuromodulation, gene therapy, and multi-omic strategies. To ensure regulatory compliance of all animal work, support scientific teams in exper
Andreas PautzEnseignement et PhD Doctorant·es actuel·les Sofia Portolan, Michel Saliba, Bishal Torrente, Alexis Paul Boris Claude Dupont-Bembinoff, Cynthia Camila Güttlein A dirigé les thèses EPFL de Ting Zhu, Vladimir Vladimirov Brankov, Boris Aviv Hombourger, Damar Canggih Wicaksono, Petra Mala, Adolfo Rais, Valentyn Bykov, Daniel Jerôme Siefman, Evgeny Nikitin, Dionysios Chionis, Oskari Ville Pakari, Friederike Bostelmann, Jiani Gao, Efstathios Vlassopoulos, Alessandro Scolaro, Stefan Radman, Alexander Aures, Lubom
Maud EhrmannMaud Ehrmann is a research scientist at EPFL’s Digital Humanities Laboratory lead by Prof.
Frédéric Kaplan
. She holds a PhD in Computational Linguistics from the Paris Diderot Universtiy (Paris 7) and has been engaged in a large number of scientific projects centred on information extraction and text analysis, both for present-time and historical documents. Her main research interests span Natural Language Processing and Digital Humanities and include, among others, historical text annotation, historical data processing and representation, named entity recognition, and multilingual linguistic resources creation.
Her current work at the DHLAB focuses on
‘impresso - Media Monitoring of the Past’
, a SNF sinergia project she initiated with
Marten Düring
(
C2DH
) and
Simon Clematide
(
ICL
) and which aims at enabling critical analysis of historical newspapers. In addition to the overall project management, her contributions to this project include system design and data management, annotation and benchmarking and named entity processing. Besides, she participates to the activities of the
Venice Time Machine
, working particularly on information extraction and knowledge representation tasks. Previously, she worked on the
Garzoni
project where she supervised and contributed to the development of a web-based transcription and annotation interface - in collaboration with Orlin Topalov, and built a linked data-based historical knowledge base. She also contributed to the
Le Temps Digital Archives project
.
Prior to joining the DHLAB, she worked at the
Linguistics Computing Laboratory
at the Sapienza University of Rome with Roberto Navigli, where she worked on the
BabelNet
resource - a very large multilingual encyclopaedic dictionary and semantic network - and contributed to the
LIDER
project. Before that, she has been working for four years at the European Commission’s Joint Research Centre in Ispra, Italy, as member of the OPTIMA unit (now
Text and Data mining
unit), which develops innovative and application-oriented solutions for retrieving and extracting information from the Internet with a focus on high multilinguality. Together with Erik van der Goot,
Ralf Steinberger
, Hristo Tanev, Leo della Rocca and many others, she contributed to the development of the
Europe Media Monitor
(EMM). Prior, she worked at the Xerox Europe Research Centre in Grenoble, France (now
Naver Labs Europe
) in the Parsing & Semantics group led by Frédérique Segond, first as PhD candidate supported through a CIFRE grant under the supervision of
Caroline Brun
and
Bernard Victorri
, then as a post-doctoral researcher. There her research focused mainly on the automatic processing and fine-grained analysis of entities of interest, specifically named entities and temporal expressions.
Romain GuietExpertise
Development of BioImage Analysis workflows and algorithms to extract quantitative data from microscopy images.BioSample Preparation : in vitro cell, organoid, time-lapse, fixation, staining strategies, actin, mitochondria, fluorescent protein expressionBioImage Acquisition : Widefield, Confocal, Whole Slide Imaging, Super-resolution (SIM, STORM, STED), FRET, FRAP, FLIMBioImage Analysis: Colocalisation analysis, Deconvolution, Time-lapse , Whole Slide ImagingTools & Software: ImageJ/Fiji, QuPath, i
Simon GuilloudExpertise
I am a PhD student at EPFL working in the Laboratory of Automated Reasoning and Analysis with Prof. Viktor KunÄak.My main domains of research are proof assistants and algorithms for logic-related problems.
Expertise
I am a PhD student at EPFL working in the Laboratory of Automated Reasoning and Analysis with Prof. Viktor KunÄak.My main domains of research are proof assistants and algorithms for logic-related problems.
Cristian GalpertiExpertise
Electronics engineering Mechanical engineering Control systems
Enseignement et PhD Cours Control and Operation of Tokamaks PHYS-748
Fabrizio SossanExpertise
Mathematical Modelling, Forecasting and Optimization for Power System Applications
Enseignement et PhD Doctorant·es actuel·les Keyu Jia A co-dirigé les thèses EPFL de Yihui Zuo, Mohsen Kalantar Neyestanaki, Rahul Kumar Gupta Cours Energy storage systems EE-466 Ce cours présente les principales technologies de stockage d'énergie, leurs attributs, leurs modèles mathématiques et leurs applications (stationnaires et mobiles), de la conception à l'exploitation et au contrôle, avec un
