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Concept

Hypergraphe

Publications associées (31)

Molecular hypergraph neural networks

Philippe Schwaller, Junwu Chen

Graph neural networks (GNNs) have demonstrated promising performance across various chemistry-related tasks. However, conventional graphs only model the pairwise connectivity in molecules, failing to adequately represent higher order connections, such as m ...

Aip Publishing2024

Towards improving full-length ribosome density prediction by bridging sequence and graph-based representations

Pierre Vandergheynst, Felix Naef, Cédric Gobet, Francesco Craighero, Mohan Vamsi Nallapareddy

Translation elongation plays an important role in regulating protein concentrations in the cell, and dysregulation of this process has been linked to several human diseases. In this study, we use data from ribo-seq experiments to model ribosome densities, ...

PMLR2024

Graph Exploration for Effective Multiagent Q-Learning

Ali H. Sayed, Ainur Zhaikhan

This article proposes an exploration technique for multiagent reinforcement learning (MARL) with graph-based communication among agents. We assume that the individual rewards received by the agents are independent of the actions by the other agents, while ...

Ieee-Inst Electrical Electronics Engineers Inc2024

The connection of the acyclic disconnection and feedback arc sets - On an open problem of Figueroa et al

Lukas Fritz Felix Vogl

We examine the connection of two graph parameters, the size of a minimum feedback arcs set and the acyclic disconnection. A feedback arc set of a directed graph is a subset of arcs such that after deletion the graph becomes acyclic. The acyclic disconnecti ...

Elsevier2024

Hypergraph-Based Fast Distributed AC Power Flow Optimization

Colin Neil Jones, Yuning Jiang, Yingzhao Lian

This paper presents a novel distributed approach for solving AC power flow (PF) problems. The optimization problem is reformulated into a distributed form using a communication structure corresponding to a hypergraph, by which complex relationships between ...

IEEE2023

Scalable maximal subgraph mining with backbone-preserving graph convolutions

Karl Aberer, Thành Tâm Nguyên, Quoc Viet Hung Nguyen, Thanh Trung Huynh

Maximal subgraph mining is increasingly important in various domains, including bioinformatics, genomics, and chemistry, as it helps identify common characteristics among a set of graphs and enables their classification into different categories. Existing ...

ELSEVIER SCIENCE INC2023

Spectral Hypergraph Sparsifiers of Nearly Linear Size

Mikhail Kapralov, Jakab Tardos

Graph sparsification has been studied extensively over the past two decades, culminating in spectral sparsifiers of optimal size (up to constant factors). Spectral hypergraph sparsification is a natural analogue of this problem, for which optimal bounds on ...

IEEE COMPUTER SOC2022

Space-Efficient Representations of Graphs

Jakab Tardos

With the increasing prevalence of massive datasets, it becomes important to design algorithmic techniques for dealing with scenarios where the input to be processed does not fit in the memory of a single machine. Many highly successful approaches have emer ...

EPFL2022

Motif Cut Sparsifiers

Mikhail Kapralov, Jakab Tardos, Mikhail Makarov

A motif is a frequently occurring subgraph of a given directed or undirected graph G (Milo et al.). Motifs capture higher order organizational structure of G beyond edge relationships, and, therefore, have found wide applications such as in graph clusterin ...

IEEE COMPUTER SOC2022

Incompleteness of graph neural networks for points clouds in three dimensions

Michele Ceriotti, Sergey Pozdnyakov

Graph neural networks (GNN) are very popular methods in machine learning and have been applied very successfully to the prediction of the properties of molecules and materials. First-order GNNs are well known to be incomplete, i.e. there exist graphs that ...

IOP Publishing Ltd2022

A Unified Experiment Design Approach for Cyclic and Acyclic Causal Models

Negar Kiyavash, Ehsan Mokhtarian, Saber Salehkaleybar

We study experiment design for unique identification of the causal graph of a system where the graph may contain cycles. The presence of cycles in the structure introduces major challenges for experiment design as, unlike acyclic graphs, learning the skele ...

2023

Toward Mobile Distributed Ledgers

Boi Faltings, Sujit Prakash Gujar

Advances in mobile computing have paved the way for new types of distributed applications that can be executed solely by mobile devices on Device-to-Device (D2D) ecosystems (e.g., crowdsensing). Sophisticated applications, like cryptocurrencies, need distr ...

IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC2022

Towards Tight Bounds for Spectral Sparsification of Hypergraphs

Mikhail Kapralov, Jakab Tardos

Cut and spectral sparsification of graphs have numerous applications, including e.g. speeding up algorithms for cuts and Laplacian solvers. These powerful notions have recently been extended to hypergraphs, which are much richer and may offer new applicati ...

ASSOC COMPUTING MACHINERY2021

Estimating an extreme Bayesian network via scalings

Mario Krali

A recursive max-linear vector models causal dependence between its components by expressing each node variable as a max-linear function of its parental nodes in a directed acyclic graph and some exogenous innovation. Motivated by extreme value theory, inno ...

ELSEVIER INC2021

Uniform parsing for hyperedge replacement grammars

Petter Harald Ericson

It is well known that hyperedge-replacement grammars can generate NP-complete graph languages even under seemingly harsh restrictions. This means that the parsing problem is difficult even in the non-uniform setting, in which the grammar is considered to b ...

ACADEMIC PRESS INC ELSEVIER SCIENCE2021

Multilayer Graph Clustering With Optimized Node Embedding

Pascal Frossard, Mireille El Gheche

We are interested in multilayer graph clustering, which aims at dividing the graph nodes into categories or communities. To do so, we propose to learn a clustering-friendly embedding of the graph nodes by solving an optimization problem that involves a fid ...

IEEE2021

Figlearn: Filter And Graph Learning Using Optimal Transport

Pascal Frossard, Mireille El Gheche, Matthias Minder

In many applications, a dataset can be considered as a set of observed signals that live on an unknown underlying graph structure. Some of these signals may be seen as white noise that has been filtered on the graph topology by a graph filter. Hence, the k ...

IEEE2021

Efficient Streaming Subgraph Isomorphism with Graph Neural Networks

Karl Aberer, Quoc Viet Hung Nguyen, Chi Thang Duong

Queries to detect isomorphic subgraphs are important in graph-based data management. While the problem of subgraph isomorphism search has received considerable attention for the static setting of a single query, or a batch thereof, existing approaches do n ...

ASSOC COMPUTING MACHINERY2021

Representation Learning for Multi-relational Data

Eda Bayram

Recent years have witnessed a rise in real-world data captured with rich structural information that can be better depicted by multi-relational or heterogeneous graphs. However, research on relational representation learning has so far mostly focused on th ...

EPFL2021

Dynamic Balanced Graph Partitioning

Andreas Loukas, Georg Stefan Schmid

This paper initiates the study of the classic balanced graph partitioning problem from an online perspective: Given an arbitrary sequence of pairwise communication requests between n nodes, with patterns that may change over time, the objective is to servi ...

SIAM Publications2020

Publications associées (31)