Publications related to Impact of phylogeny on inference from protein sequences: from models to natural data

Related publications (8)

Computational approaches for spatialomics data: construction, integration and analysis of biomolecular atlases

Cellular function and behavior are governed not only by molecular composition but also by a cell's native environmental context. By leveraging in-depth molecular quantification and high-resolution imaging methods to study microenvironmental composition and ...

EPFL2025

Analyzing Various Biological Fluids with a Single Automated Proteomic Workflow for Biomarker Discovery

Loïc Dayon

The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.Protein biomarker discovery in human biological fluids has greatly developed over the past two decades thanks to technological advances allowing deeper ...

Springer US2025

Fundamentals on the mechanisms involved in plasma-activated water decontamination

Rita Agus

Plasma-activated water (PAW) is an innovative antimicrobial solution with great potential in enhancing food safety, advancing healthcare, and supporting environmental sustainability. This thesis investigates the inactivation mechanisms of \textit{Escherich ...

EPFL2025

Unravelling the components of diffuse scattering using deep learning

Lucas Sebastian Powell-Rudden

Many technologically important material properties are underpinned by disorder and short-range structural correlations; therefore, elucidating structure-property relationships in functional materials requires understanding both the average and the local st ...

Int Union Crystallography2024

Track: Machine Learning in Protein Science De Novo Design of Viral Epitope Mimetics with Non-Regular Structural Features

Bruno Emanuel Ferreira De Sousa Correia, Karla Montserrat Castro Gilabert, Anastassia Andreevna Vorobieva

WILEY2023

Shake-table testing of a stone masonry building aggregate: overview of blind prediction study

Katrin Beyer, Igor Tomic

City centres of Europe are often composed of unreinforced masonry structural aggregates, whose seismic response is challenging to predict. To advance the state of the art on the seismic response of these aggregates, the Adjacent Interacting Masonry Structu ...

2023

Global and gene-specific translational regulation in Escherichia coli across different conditions

Hsin-Jung Li

How well mRNA transcript levels represent protein abundances has been a controversial issue. Particularly across different environments, correlations between mRNA and protein exhibit remarkable variability from gene to gene. Translational regulation is lik ...

2022

Structure-based optimization of type III indoleamine 2,3-dioxygenase 1 (IDO1) inhibitors

Pierre Vogel, Florence Pojer, Somi Reddy Majjigapu, Aline Emma Christine Reynaud

The haem enzyme indoleamine 2,3-dioxygenase 1 (IDO1) catalyses the rate-limiting step in the kynurenine pathway of tryptophan metabolism and plays an essential role in immunity, neuronal function, and ageing. Expression of IDO1 in cancer cells results in t ...

TAYLOR & FRANCIS LTD2022