Publications related to A minimalistic microbial food web in an excavated deep subsurface clay rock

Microbial genome collection of aerobic granular sludge cultivated in sequencing batch reactors using different carbon source mixtures

Aline Sondra Adler, Christof Holliger, Pilar Natalia Rodilla Ramírez, Laetitia Janine Andrée Cardona, Jaspreet Singh Saini, Ruizhe Pei

Aerobic granular sludge (AGS) consists of a microbial consortium that has an important role in wastewater treatment. This study investigates AGS microorganisms cultivated in a laboratory-scale sequencing batch reactor. Metagenomic sequencing was conducted ...

Amer Soc Microbiology2024

Microbial hydrogen sinks in the sand-bentonite backfill material for the deep geological disposal of radioactive waste

Rizlan Bernier-Latmani, Manon Frutschi, Niels Burzan, Aislinn Ann Boylan, Nicolas Louis Maurice Jacquemin, Simiao Wang, Camille Aude Rolland

The activity of subsurface microorganisms can be harnessed for engineering projects. For instance, the Swiss radioactive waste repository design can take advantage of indigenous microorganisms to tackle the issue of a hydrogen gas (H2) phase pressure build ...

Frontiers Media SA2024

A FEM modelling workflow to simulate THM effects in the rock around nuclear waste packages

Matthias Timothee Stanislas Wojnarowicz

High-level waste, stemming from nuclear electricity generation poses significant environmental and safety concerns. Currently, high-level wastes are stored in interim facilities needing constant monitoring and waiting for a definitive solution. Deep geolog ...

EPFL2024

Benchmarking informatics approaches for virus discovery: caution is needed when combining in silico identification methods

Jaspreet Singh Saini

Understanding the ecological impacts of viruses on natural and engineered ecosystems relies on the accurate identification of viral sequences from community sequencing data. To maximize viral recovery from metagenomes, researchers frequently combine viral ...

Amer Soc Microbiology2024

Comparison of Three Viral Nucleic Acid Preamplification Pipelines for Sewage Viral Metagenomics

Tamar Kohn, Xavier Fernandez Cassi

Viral metagenomics is a useful tool for detecting multiple human viruses in urban sewage. However, more refined protocols are required for its effective use in disease surveillance. In this study, we investigated the performance of three different preampli ...

2024

Thermo-hydro-mechanical behaviour of the Callovo-Oxfordian claystone under thermal changes

Héloïse Manon Fuselier

Underground storage of radioactive waste is consensually recognised as the safest storage solution by European and worldwide countries relying mainly or partially on nuclear energy production. Over twenty years of research led by the French national agency ...

EPFL2024

Evolution of water content and suction of Opalinus Clay from recovery at the drilling site to handling in the laboratory

Lyesse Laloui, Alessio Ferrari, Angelica Tuttolomondo

Advanced geotechnical engineering applications, such as shale gas extraction, CO2 geological sequestration, and geological radioactive waste storage, often involve various types of shales located at significant depths. Shales exhibit mechanical properties ...

Pergamon-Elsevier Science Ltd2024

Multi-well plate lid for single-step pooling of 96 samples for high-throughput barcode-based sequencing

Bart Deplancke, Daniel Migliozzi, Hüseyin Baris Atakan, Mustafa Demir, Riccardo Dainese, Daniel Alpern, Dariia Gudkova, Gilles Weder

High-throughput transcriptomics is of increasing fundamental biological and clinical interest. The generation of molecular data from large collections of samples, such as biobanks and drug libraries, is boosting the development of new biomarkers and treatm ...

Springer2024

The microbial genomics of glacier-fed streams: adaptations to an extreme ecosystem

Massimo Bourquin

Glacier-fed streams are the cold, ultra-oligotrophic, and unstable streams that are fed by glacial meltwater. Despite these extreme conditions, they harbour a diverse and abundant microbial diversity that develops into biofilms, covering the boulders and s ...

EPFL2024

Treeline displacement may affect lake dissolved organic matter processing at high latitudes and altitudes

Hannes Markus Peter

Climate change induced shifts in treeline position, both towards higher altitudes and latitudes induce changes in soil organic matter. Eventually, soil organic matter is transported to alpine and subarctic lakes with yet unknown consequences for dissolved ...

Nature Portfolio2024

Reconstruction and analysis of genome-scale metabolic networks in single organisms and microbial communities

Evangelia Vagena

Microorganisms are a key component in the chain of life. They are essential for agriculture, produce a large proportion of oxygen, and play a central role in the cycle of elements. Microorganisms are widely used in the production of food and alcoholic beve ...

EPFL2024

Global emergent responses of stream microbial metabolism to glacier shrinkage

Nicola Deluigi, Tom Ian Battin, Hannes Markus Peter, Michail Styllas, Tyler Joe Kohler, Massimo Bourquin

Most cryospheric ecosystems are energy limited. How their energetics will respond to climate change remains largely unknown. This is particularly true for glacier-fed streams, which interface with the cryosphere and initiate some of Earth's largest river s ...

Nature Portfolio2024

Investigation of microbial community dynamics in soil during variable hydrological forcing

Simiao Wang

Climate change is expected to alter the temporal distribution of precipitation events, leading to prolonged drought periods and an increased frequency of extreme precipitation events. Changes in precipitation pattern will directly affect soil moisture dyna ...

EPFL2024

Organic matters, but inorganic matters too: column examination of elevated mercury sorption on low organic matter aquifer material using concentrations and stable isotope ratios

Lorenz Schwab

Sorption of mercury (Hg) in soils is suggested to be predominantly associated with organic matter (OM). However, there is a growing collection of research that suggests that clay minerals and oxides are also important solid phases for the sorption of solu ...

2024

Experimental and Numerical Investigation on Water Exchange of Opalinus Clay Samples

Alessio Ferrari, Qazim Llabjani, Eleni Stavropoulou, Vincenzo Sergio Vespo

Opalinus Clay is a fine-grained sedimentary geomaterial with a mineral composition consisting mainly of silicates, carbonates and quartz. Due to its favourable barrier properties, this geomaterial has been selected as the host rock for the underground disp ...

Wei Wu, Universität für Bodenkultur2023

Hydro-Mechanical Characterization of a Shale by Unusually High-Pressure Oedometric Tests

Alessio Ferrari, Eleonora Crisci

The note presents selected results of an experimental campaign conducted with the aim to investigate the hydro-mechanical behaviour of a shale recovered at a depth of about 900 m below the ground. High-pressure oedometric tests were performed to investigat ...

Wei Wu, Universität für Bodenkultur2023

Thermo-hydro-mechanical analysis of the complete lifetime of the bentonite barrier in the FEBEX in-situ test

Lyesse Laloui, Alessio Ferrari, Yafei Qiao, Jose Antonio Bosch Llufriu

The FEBEX test was a large-scale demonstration project for the deep geological disposal concept of nuclear waste involving bentonite seals that lasted 18 years. One of the objectives of the test was to evaluate the capabilities of numerical methods to prov ...

2023

Sulfur-cycling chemolithoautotrophic microbial community dominates a cold, anoxic, hypersaline Arctic spring

Ianina Altshuler

Background Gypsum Hill Spring, located in Nunavut in the Canadian High Arctic, is a rare example of a cold saline spring arising through thick permafrost. It perennially discharges cold (similar to 7 degrees C), hypersaline (7-8% salinity), anoxic (similar ...

BMC2023

What happens to biomass burning-emitted particles in the ocean? A laboratory experimental approach based on their tracers

Christos Panagiotopoulos

Wildfires, controlled burns, and biofuel combustion (biomass burning or BB) are major contributors to particulate matter in the atmosphere and thus have an impact on climate, human health, and ecosystems. Once emitted, the particulate matter derived from B ...

Elsevier2023

Linking Soil Structure, Hydraulic Properties, and Organic Carbon Dynamics: A Holistic Framework to Study the Impact of Climate Change and Land Management

Sara Bonetti

Climate change and unsustainable land management practices have resulted in extensive soil degradation, including alteration of soil structure (i.e., aggregate and pore size distributions), loss of soil organic carbon, and reduction of water and nutrient h ...

2023