Searching the coding region for microRNA targets

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Weighted flow time is a fundamental and very well-studied objective function in scheduling. In this paper, we study the setting of a single machine with preemptions. ...

Two prominent categories for achieving coordinated multirobot displacement are flocking and navigation in formation. Both categories have their own body of literature and characteristics, including their respective advantages and disadvantages. While typic ...

The mutational spectrum of the mitochondrial DNA (mtDNA) does not resemble any of the known mutational signatures of the nuclear genome and variation in mtDNA mutational spectra between different organisms is still incomprehensible. Since mitochondria are ...

We propose a variance reduced algorithm for solving monotone variational inequalities. Without assuming strong monotonicity, cocoercivity, or boundedness of the domain, we prove almost sure convergence of the iterates generated by the algorithm to a soluti ...

Proximal splitting methods are standard tools for nonsmooth optimization. While primal-dual methods have become very popular in the last decade for their flexibility, primal methods may still be preferred for two reasons: acceleration schemes are more effe ...

Background RNA splicing is a key post-transcriptional mechanism that generates protein diversity and contributes to the fine-tuning of gene expression, which may facilitate adaptation to environmental challenges. Here, we employ a systems approach to study ...

We present a quasilinear time algorithm to decide the word problem on a natural algebraic structures we call orthocomplemented bisemilattices, a subtheory of boolean algebra. We use as a base a variation of Hopcroft, Ullman and Aho algorithm for tree isomo ...

This article considers solving an overdetermined system of linear equations in peer-to-peer multiagent networks. The network is assumed to be synchronous and strongly connected. Each agent has a set of local data points, and their goal is to compute a line ...

Translation depends on messenger RNA (mRNA)-specific initiation, elongation, and termination rates. While translation elongation is well studied in bacteria and yeast, less is known in higher eukaryotes. Here we combined ribosome and transfer RNA (tRNA) pr ...

A major obstacle to achieving global convergence in distributed and federated learning is the misalignment of gradients across clients, or mini-batches due to heterogeneity and stochasticity of the distributed data. In this work, we show that data heteroge ...

As historical stone masonry structures are vulnerable and prone to damage in earthquakes, investigating their structural integrity is important to reduce injuries and casualties while preserving their historical value. Stone masonry is a composite material ...

We study different symbolic algorithms to solve two related reconfiguration problems on graphs: the token swapping problem and the permutation routing via matchings problem. Input to both problems is a connected graph with labeled vertices and a token in e ...

The problem of aligning Erdos-Renyi random graphs is a noisy, average-case version of the graph isomorphism problem, in which a pair of correlated random graphs is observed through a random permutation of their vertices. We study a polynomial time message- ...

This paper introduces a new algorithm for consensus optimization in a multi-agent network, where all agents collaboratively find a minimizer for the sum of their private functions. All decentralized algorithms rely on communications between adjacent nodes. ...

Searching the coding region for microRNA targets

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A (2+epsilon)-Approximation Algorithm for Preemptive Weighted Flow Time on a Single Machine

Hybrid Flock - Formation Control Algorithms

A mitochondria-specific mutational signature of aging: increased rate of A > G substitutions on the heavy strand

Forward-reflected-backward method with variance reduction

Yapa: Accelerated Proximal Algorithm For Convex Composite Problems

Enteric infection induces Lark-mediated intron retention at the 5 ' end of Drosophila genes

Equivalence Checking for Orthocomplemented Bisemilattices in Log-Linear Time

On Preconditioning of Decentralized Gradient-Descent When Solving a System of Linear Equations

Robust landscapes of ribosome dwell times and aminoacyl-tRNAs in response to nutrient stress in liver

Implicit Gradient Alignment in Distributed and Federated Learning

Geometrical Treatise on the Modelling of 3D Particulate Inclusion-Matrix Microstructures with an Application to Historical Stone Masonry Walls

Symbolic Algorithms for Token Swapping

Aligning random graphs with a sub-tree similarity message-passing algorithm

Walkman: A Communication-Efficient Random-Walk Algorithm for Decentralized Optimization