Publications by Ioannis Magkanaris

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Advances in computational capabilities and large volumes of experimental data have established computer simulations of brain tissue models as an important pillar in modern neuroscience. Alongside, a variety of domain specific languages (DSLs) have been dev ...

The need for reproducible, credible, multiscale biological modeling has led to the development of standardized simulation platforms, such as the widely-used NEURON environment for computational neuroscience. Developing and maintaining NEURON over several d ...

The simulation of detailed neuronal circuits is based on computationally expensive software simulations and requires access to a large computing cluster. The appearance of new Instruction Set Architectures (ISAs) in most recent High-Performance Computing ( ...

Synaptic plasticity underlies the brain’s ability to learn and adapt. While experiments in brain slices have revealed mechanisms and protocols for the induction of plasticity between pairs of neurons, how these synaptic changes are coordinated in biologica ...

Ioannis Magkanaris

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MOD2IR: High-Performance Code Generation for a Biophysically Detailed Neuronal Simulation DSL

Modernizing the NEURON Simulator for Sustainability, Portability, and Performance

CoreNEURON: Performance and Energy Efficiency Evaluation on Intel and Arm CPUs

Assemblies, synapse clustering and network topology interact with plasticity to explain structure-function relationships of the cortical connectome

Thalamic control of sensory processing and spindles in a biophysical somatosensory thalamoreticular circuit model of wakefulness and sleep