Romain GuietExpertise
Development of BioImage Analysis workflows and algorithms to extract quantitative data from microscopy images.BioSample Preparation : in vitro cell, organoid, time-lapse, fixation, staining strategies, actin, mitochondria, fluorescent protein expressionBioImage Acquisition : Widefield, Confocal, Whole Slide Imaging, Super-resolution (SIM, STORM, STED), FRET, FRAP, FLIMBioImage Analysis: Colocalisation analysis, Deconvolution, Time-lapse , Whole Slide ImagingTools & Software: ImageJ/Fiji, QuPath, i
Christoph KochExpertise
knows everything ;-)
Publications
My publications in Google ScholarMy publications in DBLPMy papers on EPFL's publications server (InfoScience)Prospective PhD students and postdocs please read this before contacting me.
Christoph Koch is a professor of Computer Science at EPFL, specializing in data management. Until 2010, he was an Associate Professor in the Department of Computer Science at Cornell University. Previously to this, from 2005 to 2007, he was an Associate Professor of Computer Scienc
Luciano Andres AbriataExpertise
Protein NMRNMR of paramagnetic systemsMetalloproteinsBiomolecular SpectroscopyStructural BiologyStructural BioinformaticsMolecular Modeling
ResearchPapers Link to Google Scholar
Teaching & PhD Courses Basic and advanced NMR - Level 1 A (EPFL) CH-601(x) Basic theoretical and experimental aspects of NMR will be taught. Students will be familarized with modern NMR spectrometers. Basic and advanced NMR - Level 2 (EPFL) CH-703 The goal is to give a sound theoretical an
Francesco StellacciFrancesco Stellacci graduated in Materials Engineering at the Politecnico di Milano in 1998 with a thesis on photochromic polymers with Prof. Giuseppe Zerbi and Mariacarla Gallazzi. In 1999 he moved to the Chemistry Department of the University of Arizona for as a post-doc in the group of Joe Perry in close collaboration with the group of Seth Marder. In 2002 he moved to the Department of Materials Science and Engineering at the Massachusetts Institute of Technology as an assistant professor. He was then promoted to associate without (2006) and with tenure (2009). In 2010 he moved to the Institute of Materials at EPFL as a full Professor. He holds the Alcan EP Chair. Francesco was one of the recipients of the Technology Review TR35 "35 Innovator under 35" award in 2005, and the Popular Science Magazine "Brilliant 10" award in 2007. He has been a Packard Fellow starting 2005.
Karin Lederballe MeibomEducation PhD | Molecular Biology 1997 – 1997 University of Southern Denmark (Odense University), Denmark Directed by Advisor: Poul Valentin-Hansen Professionals experiences Postdoctoral researcher 2000–2004 Stanford University, USAPostdoctoral researcher 2005–2007 INSERM, Paris, FranceChargee de recherche 2007–2012 INSERM, Paris, FranceScientist Laboratory of Experimental Biophysics 2013–2014 EPFL
Teaching & PhD Past EPFL PhD Students as codirector Solenne Anne
Elisa OricchioExpertise
Cancer geneticsMouse modelsTherapyStem cellsLymphoma
Teaching & PhD PhD Students Vamsi Krishna Polavarapu, Asli Ece Kasapoglu, Konstantina Georgakopoulou, Eleni Balli Past EPFL PhD Students Maria Christine Donaldson, Elena Battistello, Daniel Pereira Duarte, Frédérica Schyrr, Ruxandra-Andreea Lambuta, Aaron Simone Petruzzella, Jixing Zhong, Justine Epiney Courses Cancer biology I BIO-471 The course covers in detail molecular mechanisms of cancer development with emphasis on cell
Hannes Markus PeterCurrent work
I am a microbial ecologist and mainly interested in factors shaping bacterial communities and functioning in freshwater ecosystems. I use combinations of field observations, experiments and molecular techniques to test hypotheses regarding the assembly of microbial communities, the influence of environmental variability and relationships between diversity and funcioning. I enjoy working in alpine environments, which are sensitive to climate change and represent excellent model systems.
Teaching
Andrea AblasserTeaching & PhD PhD Students Ekaterina Gorbacheva, Iris Arianna Dorschel, Tieliang Gan, Yu Meng Past EPFL PhD Students Simone Margret Haag, Sélène Glück, Marilena Wischnewski, Sophie Rivara, Natasha Samson Courses Immunology - advances and therapeutic implications BIO-479 The students acquire advanced level knowledge regarding the functioning of the (vertebrate) immune system. A strong focus is placed on the molecular mechanisms underlying innate and adaptive immune responses and their impl
Maud EhrmannMaud Ehrmann is a research scientist at EPFL’s Digital Humanities Laboratory lead by Prof.
Frédéric Kaplan
. She holds a PhD in Computational Linguistics from the Paris Diderot Universtiy (Paris 7) and has been engaged in a large number of scientific projects centred on information extraction and text analysis, both for present-time and historical documents. Her main research interests span Natural Language Processing and Digital Humanities and include, among others, historical text annotation, historical data processing and representation, named entity recognition, and multilingual linguistic resources creation.
Her current work at the DHLAB focuses on
‘impresso - Media Monitoring of the Past’
, a SNF sinergia project she initiated with
Marten Düring
(
C2DH
) and
Simon Clematide
(
ICL
) and which aims at enabling critical analysis of historical newspapers. In addition to the overall project management, her contributions to this project include system design and data management, annotation and benchmarking and named entity processing. Besides, she participates to the activities of the
Venice Time Machine
, working particularly on information extraction and knowledge representation tasks. Previously, she worked on the
Garzoni
project where she supervised and contributed to the development of a web-based transcription and annotation interface - in collaboration with Orlin Topalov, and built a linked data-based historical knowledge base. She also contributed to the
Le Temps Digital Archives project
.
Prior to joining the DHLAB, she worked at the
Linguistics Computing Laboratory
at the Sapienza University of Rome with Roberto Navigli, where she worked on the
BabelNet
resource - a very large multilingual encyclopaedic dictionary and semantic network - and contributed to the
LIDER
project. Before that, she has been working for four years at the European Commission’s Joint Research Centre in Ispra, Italy, as member of the OPTIMA unit (now
Text and Data mining
unit), which develops innovative and application-oriented solutions for retrieving and extracting information from the Internet with a focus on high multilinguality. Together with Erik van der Goot,
Ralf Steinberger
, Hristo Tanev, Leo della Rocca and many others, she contributed to the development of the
Europe Media Monitor
(EMM). Prior, she worked at the Xerox Europe Research Centre in Grenoble, France (now
Naver Labs Europe
) in the Parsing & Semantics group led by Frédérique Segond, first as PhD candidate supported through a CIFRE grant under the supervision of
Caroline Brun
and
Bernard Victorri
, then as a post-doctoral researcher. There her research focused mainly on the automatic processing and fine-grained analysis of entities of interest, specifically named entities and temporal expressions.
Benjamin Marcel Daniel RothéInterests - Ribonucleoparticles biogenesis- Regulation of mRNA translation- Protein phase separation Education PhD | Biochemistry and Molecular Biology 2007 – 2012 University of Lorraine - Nancy I - FRANCE
Berend SmitBerend Smit received an MSc in Chemical Engineering in 1987 and an MSc in Physics both from the Technical University in Delft (the Netherlands). He received in 1990 cum laude PhD in Chemistry from Utrecht University (the Netherlands). He was a (senior) Research Physicists at Shell Research from 1988-1997, Professor of Computational Chemistry at the University of Amsterdam (the Netherlands) 1997-2007.
In 2004 Berend Smit was elected Director of the European Center of Atomic and Molecular Computations (CECAM) Lyon France. Since 2007 he is Professor of Chemical Engineering and Chemistry at U.C. Berkeley and Faculty Chemist at Materials Sciences Division, Lawrence Berkeley National Laboratory. Since 2014 he has been director of the Energy Center at EPFL.
Beat FierzTeaching & PhD PhD Students Paria Khalafi, Wei Cai, Pierre Alexander Miranda Herrera, Andrei Zhauniarovich, Matteo Nicolas Doudin, Zongqing Li, Enguerran Majerus, Po-Han Chang, Iana Berlina, Yuji Kamei Past EPFL PhD Students Aurore Marie-France Delachat, Sinan Kilic, Louise Catherine Bryan, Andreas Linus Bachmann, Ninad Dilip Agashe, Nora Guidotti, Maxime Nicolas Mivelaz, Kristina Makasheva, Alexandra Teslenko, Pauline Franz, Salome Riccarda Püntener, Ly Phillippe Past EPFL PhD Students as codirector Dani
