Olivier Burri

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Related publications (26)

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MarrowQuant across Aging and Aplasia: A Digital Pathology Tool for Quantification of Bone Marrow Compartments in Histological Sections

Nicolas Kunz, Olaia Maria Naveiras Torres-Quiroga, Olivier Burri, Josefine Catharina Pedersen Tratwal, Vasco Ledebur de Antas de Campos, Rita Sarkis, Frédérica Schyrr, Shanti Rojas-Sutterlin

WILEY2020

Deep Learning Enables Individual Xenograft Cell Classification in Histological Images by Analysis of Contextual Features

Michaël Unser, Cathrin Brisken, Daniel Sage, Olivier Burri, Martin Weigert, Fabio De Martino

Patient-Derived Xenografts (PDXs) are the preclinical models which best recapitulate inter- and intra-patient complexity of human breast malignancies, and are also emerging as useful tools to study the normal breast epithelium. However, data analysis gener ...

2021

Cellpose training data and scripts from "Machine learning for histological annotation and quantification of cortical layers"

Olivier Burri, Julie Meystre, Jean Nicolas Jacquemier

This Workflow contains all the material necessary to reproduce the cells detection, thanks to the QuPath performed in the paper "Machine learning for histological annotation and quantification of cortical layers" Inside this workflow and dataset, you wi ...

Zenodo2021

Measuring reporter activity domain in EPI aggregates and Gastruloids.ijm

Matthias Lütolf, Olivier Burri, Romain Guiet, Mehmet Ugur Girgin

This imagej macro analyses the reporter intensity activity and expression domain in EPI aggregates and Gastruloids. ...

Zenodo2022

MarrowQuant 2.0: A Digital Pathology Workflow Assisting Bone Marrow Evaluation in Experimental and Clinical Hematology

Bart Deplancke, Giovanna Ambrosini, Olaia Maria Naveiras Torres-Quiroga, Olivier Burri, Arne Seitz, Martin Weigert, Rita Sarkis, Frédérica Schyrr

2023

Applying Whole Organ Clearing Techniques To Spinal Cord Injury: A Survey Of Techniques

Grégoire Courtine, Olivier Burri, Quentin Barraud, Romain Guiet, Thierry Laroche, Newton Cho, Laura Battista

MARY ANN LIEBERT2018