Lecture

Variables and Operators

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In course

BIO-695: Image Processing for Life Science

Registration details will be announced via email. It takes place yearly from Sept./October to December & intends to teach image processing with a strong emphasis of applications in life sciences. The idea is to enable the participants to solve image-proces ...

Description

This lecture covers the variables in the ImageJ macro language, explaining how to define and use them, including the types of variables (Number and String) and available operators for modification. It also introduces the concept of String concatenation and hints at the use of Boolean variables for conditional statements.

In MOOC

Image Processing and Analysis for Life Scientists

Nowadays, image-based methods are indispensable for life scientists. Light microscopy especially, has evolved from sketched out observations by eye, to high throughput multi-plane, multi-channel, multi-position and multimode acquisitions that easily produce thousands of information-rich images that must be quantified somehow to answer biological questions. This course will teach you core concepts from image acquisition to image filtering and segmentation, to help you tackle simple image analysis workflows

Instructors (4)

Olivier Burri

Expertise Development of bioimage analysis workflows and algorithms to extract quantitative data from microscopy imagesTools & Software: ImageJ/Fiji, CellProfiler, ilastik, Imaris, Arivis, Matlab, RStudio, IntelliJ, Eclipse, Jupyter NotebooksProgramming languages:Java, Groovy, JavaScript, TypeScript, PHP, Python, R, C, C , Matlab, Bash Expertise Development of bioimage analysis workflows and algorithms to extract quantitative data from microscopy imagesTools & Software: ImageJ/Fiji, CellProfiler, ilastik, I

Arne Seitz

04/1996-06/2000 Scientific co-worker at Philipps-University of Marburg, Dep. of Physical Chemistry 07/2000-10/2002 Post Doc at Max-Planck Unit for Structural Molecular Biology in Hamburg 11/2002-11/2005 Post Doc at European Molecular Biolohy Laboratory (EMBL), Cell Biology and Cell Biophysics Programme 11/2005-03/2009 Staff Scientist at Advanced Light Microscopy Facility, EMBL 04/2009- Head of Bioimaging and Optics platforme (BIOP), Ecole Polytechnique Fédérale de Lausanne (EPFL)

Romain Guiet

Expertise Development of BioImage Analysis workflows and algorithms to extract quantitative data from microscopy images.BioSample Preparation : in vitro cell, organoid, time-lapse, fixation, staining strategies, actin, mitochondria, fluorescent protein expressionBioImage Acquisition : Widefield, Confocal, Whole Slide Imaging, Super-resolution (SIM, STORM, STED), FRET, FRAP, FLIMBioImage Analysis: Colocalisation analysis, Deconvolution, Time-lapse , Whole Slide ImagingTools & Software: ImageJ/Fiji, QuPath, i

Nicolas René Chiaruttini

Official source

Quiz

Related concepts (18)

String literal

A string literal or anonymous string is a literal for a string value in the source code of a computer program. Modern programming languages commonly use a quoted sequence of characters, formally "bracketed delimiters", as in x = "foo", where "foo" is a string literal with value foo. Methods such as escape sequences can be used to avoid the problem of delimiter collision (issues with brackets) and allow the delimiters to be embedded in a string. There are many alternate notations for specifying string literals especially in complicated cases.

Concatenation

In formal language theory and computer programming, string concatenation is the operation of joining character strings end-to-end. For example, the concatenation of "snow" and "ball" is "snowball". In certain formalisations of concatenation theory, also called string theory, string concatenation is a primitive notion. In many programming languages, string concatenation is a binary infix operator, and in some it is written without an operator.

String interpolation

In computer programming, string interpolation (or variable interpolation, variable substitution, or variable expansion) is the process of evaluating a string literal containing one or more placeholders, yielding a result in which the placeholders are replaced with their corresponding values. It is a form of simple template processing or, in formal terms, a form of quasi-quotation (or logic substitution interpretation). The placeholder may be a variable name, or in some languages an arbitrary expression, in either case evaluated in the current context.

Boolean algebra

In mathematics and mathematical logic, Boolean algebra is a branch of algebra. It differs from elementary algebra in two ways. First, the values of the variables are the truth values true and false, usually denoted 1 and 0, whereas in elementary algebra the values of the variables are numbers. Second, Boolean algebra uses logical operators such as conjunction (and) denoted as ∧, disjunction (or) denoted as ∨, and the negation (not) denoted as ¬.

String operations

In computer science, in the area of formal language theory, frequent use is made of a variety of string functions; however, the notation used is different from that used for computer programming, and some commonly used functions in the theoretical realm are rarely used when programming. This article defines some of these basic terms. A string is a finite sequence of characters. The empty string is denoted by . The concatenation of two string and is denoted by , or shorter by . Concatenating with the empty string makes no difference: .

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