Lecture

Preprocessing & Topographic Mapping

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In course

MICRO-513: Signal processing for functional brain imaging

Computational methods for the analysis of human brain imaging data ...

Description

This lecture covers the preprocessing pipeline for functional brain imaging, including slice-timing correction, realignment, unwarping, and co-registration. It also delves into topographic mapping in sensory cortices, such as retinotopy and tonotopy.

Instructor

Dimitri Nestor Alice Van De Ville

Expertise Brain and spinal cord imaging, signal and image processing, network science, dynamic systems Teaching & PhD PhD Students Alexandre Cionca, Chun Hei Michael Chan, Flavia Petruso, Bassam El Rawas, Nikolaos Molochidis, Christophe Pascal Jérémie Chênes, Fabrice Jean Guibert, Alessio Siviglia, Ekansh Sareen, Beatrice Lugli Past EPFL PhD Students Djano Kandaswamy, Fikret Isik Karahanoglu, Nora Leonardi, Zafer Dogan, Jeffrey Adam Kasten, Naghmeh Ghazaleh, Rotem Roza Kopel, Daniela Maria Zöller, Thomas

Official source

Related concepts (32)

Tonotopy

In physiology, tonotopy (from Greek tono = frequency and topos = place) is the spatial arrangement of where sounds of different frequency are processed in the brain. Tones close to each other in terms of frequency are represented in topologically neighbouring regions in the brain. Tonotopic maps are a particular case of topographic organization, similar to retinotopy in the visual system. Tonotopy in the auditory system begins at the cochlea, the small snail-like structure in the inner ear that sends information about sound to the brain.

Topographic map (neuroanatomy)

A topographic map is the ordered projection of a sensory surface, like the retina or the skin, or an effector system, like the musculature, to one or more structures of the central nervous system. Topographic maps can be found in all sensory systems and in many motor systems. Retinotopy The visual system refers to the part of the central nervous system that allows an organism to see. It interprets information from visible light to build a representation of the world.

Functional magnetic resonance imaging

Functional magnetic resonance imaging or functional MRI (fMRI) measures brain activity by detecting changes associated with blood flow. This technique relies on the fact that cerebral blood flow and neuronal activation are coupled. When an area of the brain is in use, blood flow to that region also increases. The primary form of fMRI uses the blood-oxygen-level dependent (BOLD) contrast, discovered by Seiji Ogawa in 1990.

Sensory processing

Sensory processing is the process that organizes and distinguishes sensation (sensory information) from one's own body and the environment, thus making it possible to use the body effectively within the environment. Specifically, it deals with how the brain processes multiple sensory modality inputs, such as proprioception, vision, auditory system, tactile, olfactory, vestibular system, interoception, and taste into usable functional outputs. It has been believed for some time that inputs from different sensory organs are processed in different areas in the brain.

Postcentral gyrus

In neuroanatomy, the postcentral gyrus is a prominent gyrus in the lateral parietal lobe of the human brain. It is the location of the primary somatosensory cortex, the main sensory receptive area for the sense of touch. Like other sensory areas, there is a map of sensory space in this location, called the sensory homunculus. The primary somatosensory cortex was initially defined from surface stimulation studies of Wilder Penfield, and parallel surface potential studies of Bard, Woolsey, and Marshall.

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