Publications associées à Multiscale Interior Tomography Using 1D Generalized Total Variation

Towards Trustworthy Deep Learning for Image Reconstruction

The remarkable ability of deep learning (DL) models to approximate high-dimensional functions from samples has sparked a revolution across numerous scientific and industrial domains that cannot be overemphasized. In sensitive applications, the good perform ...

EPFL2024

Correlating cryo-super resolution radial fluctuations and dual-axis cryo-scanning transmission electron tomography to bridge the light-electron resolution gap

Prabhu Prasad Swain

Visualization of organelles and their interactions with other features in the native cell remains a challenge in modern biology. We have introduced cryo-scanning transmission electron tomography (CSTET), which can ac-cess 3D volumes on the scale of 1 micro ...

Elsevier2023

PET REBINNING WITH REGULARIZED DENSITY SPLINES

Michaël Unser

PET reconstruction algorithms have long relied on sinogram rebinning. However, as detectors grow smaller in a recent wave of cutting-edge scanners, individual sensors no longer accrue hundreds of photons. Instead, most detect a single photon or none at all ...

IEEE2023

Integrated electronics for time-of-flight positron emission tomography photodetectors

Andrada Alexandra Muntean

Positron emission tomography is a nuclear imaging technique well known for its use in oncology for cancer diagnosis and staging. A PET scanner is a complex machine which comprises photodetectors placed in a ring configuration that detect gamma photons gen ...

EPFL2023

3D reconstruction of curvilinear one-dimensional objects viewed in transmission electron microscopy

Gulnaz Ganeeva

To obtain a more complete understanding of material microstructure at the nanoscale and to gain profound insights into their properties, there is a growing need for more efficient and precise methods that can streamline the process of 3D imaging using a tr ...

EPFL2023

2.5 Hz sample rate time-domain near-infrared optical tomography based on SPAD-camera image tissue hemodynamics

Edoardo Charbon, Scott Anthony Lindner, Jingjing Jiang, Martin Wolf

Tim-domain near-infrared optical tomography (TD NIROT) techniques based on diffuse light were gaining performance over the last years. They are capable of imaging tissue at several centimeters depth and reveal clinically relevant information, such as tissu ...

OPTICAL SOC AMER2022

Bragg edge tomography characterization of additively manufactured 316L steel

Christian Leinenbach, Roland Logé, Nikola Kalentics, Efthymios Polatidis, Markus Strobl

In this work we perform a neutron Bragg edge tomography of stainless steel 316L additive manufacturing samples, one as built via standard laser powder bed fusion, and one using the novel three-dimensional (3D) laser shock peening technique. First, we consi ...

AMER PHYSICAL SOC2022

Combining Model Driven and Data Driven Approaches for Inverse Problems in Parameter Estimation and Image Reconstruction: From Modelling to Validation

Thomas Yu

Machine learning has become the state of the art for the solution of the diverse inverse problems arising from computer vision and medical imaging, e.g. denoising, super-resolution, de-blurring, reconstruction from scanner data, quantitative magnetic reson ...

EPFL2022

Advanced Techniques in Optical Diffraction Tomography

Ahmed Bassam Sayed Ayoub Mohamed Emam

In this thesis, we study the 3 challenges described above. First, we study different reconstruction techniques and assess the fidelity of each reconstruction results by means of structured illumination and phase conjugation. By reconstructing the 3D refrac ...

EPFL2022

Physics-informed neural networks for diffraction tomography

Demetri Psaltis, Ahmed Ayoub, Carlo Gigli, Amirhossein Saba Shirvan

We propose a physics-informed neural network (PINN) as the forward model for tomographic reconstructions of biological samples. We demonstrate that by training this network with the Helmholtz equation as a physical loss, we can predict the scattered field ...

SPIE-SOC PHOTO-OPTICAL INSTRUMENTATION ENGINEERS2022

Micromechanically inspired investigation of cemented granular materials: part I-from X-ray micro tomography to measurable model variables

Gioacchino Viggiani, Edward Carlo Giorgio Andò

Cemented granular materials are abundant in nature and are often artificially produced. Their macroscopic behaviour is driven by small-scale material processes, which are generally classified as: grain breakage, cement damage and fragment rearrangement. Th ...

SPRINGER HEIDELBERG2022

Polarization-sensitive optics diffraction tomography

Demetri Psaltis, Ahmed Ayoub, Joowon Lim, Elizabeth Elena Antoine, Amirhossein Saba Shirvan

Polarization of light has been widely used as a contrast mechanism in two-dimensional (2D) microscopy and also in some three-dimensional (3D) imaging modalities. In this paper, we report the 3D tomographic reconstruction of the refractive index (RI) tensor ...

2021

Learning Lipschitz-Controlled Activation Functions in Neural Networks for Plug-and-Play Image Reconstruction Methods

Michaël Unser, Dimitris Perdios, Sébastien Alexandre Emery, Pakshal Narendra Bohra, Alexis Marie Frederic Goujon

Ill-posed linear inverse problems are frequently encountered in image reconstruction tasks. Image reconstruction methods that combine the Plug-and-Play (PnP) priors framework with convolutional neural network (CNN) based denoisers have shown impressive per ...

2021

Continuous-Domain Formulation of Inverse Problems for Composite Sparse-Plus-Smooth Signals

Michaël Unser, Shayan Aziznejad, Thomas Jean Debarre

We present a novel framework for the reconstruction of 1D composite signals assumed to be a mixture of two additive components, one sparse and the other smooth, given a finite number of linear measurements. We formulate the reconstruction problem as a cont ...

2021

CryoGAN: A New Reconstruction Paradigm for Single-Particle Cryo-EM Via Deep Adversarial Learning

Michaël Unser, Laurène Donati, Harshit Gupta, Michael Thompson McCann

We present CryoGAN, a new paradigm for single-particle cryo-electron microscopy (cryo-EM) reconstruction based on unsupervised deep adversarial learning. In single-particle cryo-EM, the structure of a biomolecule needs to be reconstructed from a large set ...

2021

Methods and apparatus for tomographic additive manufacturing with a spatially coherent light source

Christophe Moser, Damien Claude-Marie Loterie, Paul Delrot

A method of fabricating a three-dimensional article comprises providing a spatially coherent light source (101, 201), generating from said light source (101, 201), patterns of light based on computed tomographic projections of said three-dimensional articl ...

2020

Micrometer-resolution X-ray tomographic full-volume reconstruction of an intact post-mortem juvenile rat lung

Anders Larsson, Marco Stampanoni, Goran Lovric

In this article, we present an X-ray tomographic imaging method that is well suited for pulmonary disease studies in animal models to resolve the full pathway from gas intake to gas exchange. Current state-of-the-art synchrotron-based tomographic phase-con ...

SPRINGER2021

Image reconstruction for novel time domain near infrared optical tomography: towards clinical applications

Edoardo Charbon, Scott Anthony Lindner, Jingjing Jiang, Chunmin Zhang, Martin Wolf

Near infrared optical tomography (NIROT) is an emerging modality that enables imaging the oxygenation of tissue, which is a biomarker of tremendous clinical relevance. Measuring in reflectance is usually required when NIROT is applied in clinical scenarios ...

2020

Three-dimensional tomography of red blood cells using deep learning

Demetri Psaltis, Ahmed Ayoub, Joowon Lim

We accurately reconstruct three-dimensional (3-D) refractive index (RI) distributions from highly ill-posed two-dimensional (2-D) measurements using a deep neural network (DNN). Strong distortions are introduced on reconstructions obtained by the Wolf tran ...

2020

Roadmap toward the 10 ps time-of-flight PET challenge

Mathieu Benoit, Edoardo Charbon, Christian Morel, Joao Varela

Since the seventies, positron emission tomography (PET) has become an invaluable medical molecular imaging modality with an unprecedented sensitivity at the picomolar level, especially for cancer diagnosis and the monitoring of its response to therapy. Mor ...

IOP PUBLISHING LTD2020