Publications associées à Spline-Based Deforming Ellipsoids for Interactive 3D Bioimage Segmentation

Modular segmentation, spatial analysis and visualization of volume electron microscopy datasets

Volume electron microscopy is the method of choice for the in situ interrogation of cellular ultrastructure at the nanometer scale, and with the increase in large raw image datasets generated, improving computational strategies for image segmentation and s ...

Nature Portfolio2024

The multimodality cell segmentation challenge: toward universal solutions

Xin Yang, Bo Wang, Yixin Wang, Jun Ma, Lin Han, Maxime Emmanuel Scheder, Marco Labagnara, Sahand Jamal Rahi, Vojislav Gligorovski, Yao Zhang

Cell segmentation is a critical step for quantitative single-cell analysis in microscopy images. Existing cell segmentation methods are often tailored to specific modalities or require manual interventions to specify hyper-parameters in different experimen ...

Nature Portfolio2024

Fast and Future: Towards Efficient Forecasting in Video Semantic Segmentation

Evann Pierre Guy Courdier

Deep learning has revolutionized the field of computer vision, a success largely attributable to the growing size of models, datasets, and computational power. Simultaneously, a critical pain point arises as several computer vision applications are deploye ...

EPFL2024

Compact and effective photon-resolved image scanning microscope

Giorgio Tortarolo

Fluorescence confocal laser-scanning microscopy (LSM) is one of the most popular tools for life science research. This popularity is expected to grow thanks to single-photon array detectors tailored for LSM. These detectors offer unique single-photon spati ...

Spie-Soc Photo-Optical Instrumentation Engineers2024

Land Cover Mapping From Multiple Complementary Experts Under Heavy Class Imbalance

Devis Tuia, Valérie Zermatten, Javiera Francisca Castillo Navarro, Xiaolong Lu

Deep learning has emerged as a promising avenue for automatic mapping, demonstrating high efficacy in land cover categorization through various semantic segmentation models. Nonetheless, the practical deployment of these models encounters important challen ...

Ieee-Inst Electrical Electronics Engineers Inc2024

Aggregating Spatial and Photometric Context for Photometric Stereo

David Honzátko

Photometric stereo, a computer vision technique for estimating the 3D shape of objects through images captured under varying illumination conditions, has been a topic of research for nearly four decades. In its general formulation, photometric stereo is an ...

EPFL2024

Mesh-based topology, shape and sizing optimization of ribbed plates

In this paper, we present a new parameterization and optimization procedure for minimizing the weight of ribbed plates. The primary goal is to reduce embodied CO2 in concrete floors as part of the effort to diminish the carbon footprint of the construction ...

Springer2024

Label-Free Techniques for Probing Biomolecular Condensates

Aleksandra Radenovic, Khalid Ashraf Mohie Ibrahim, Helena Miljkovic, Wayne Yang Wen Wei, Akhil Sai Naidu

Biomolecular condensates play important roles in a wide array of fundamental biological processes, such as cellular compartmentalization, cellular regulation, and other biochemical reactions. Since their discovery and first observations, an extensive and e ...

Amer Chemical Soc2024

SOMOphilic alkyne vs radical-polar crossover approaches: The full story of the azido-alkynylation of alkenes

Jérôme Waser, Julien Aymeric Borrel

We report the detailed background for the discovery and development of the synthesis of homopropargylic azides by the azidoalkynylation of alkenes. Initially, a strategy involving SOMOphilic alkynes was adopted, but only resulted in a 29% yield of the desi ...

Beilstein-Institut2024

Self-supervised Dense Representation Learning for Live-Cell Microscopy with Time Arrow Prediction

Max Stieber, Martin Weigert, Benjamin Tobias Gallusser

State-of-the-art object detection and segmentation methods for microscopy images rely on supervised machine learning, which requires laborious manual annotation of training data. Here we present a self-supervised method based on time arrow prediction pre-t ...

Springer International Publishing Ag2023

Segmenting Without Annotating: Crack Segmentation and Monitoring via Post-Hoc Classifier Explanations

Devis Tuia, Hugo Laurent Pascal Porta, Florent Evariste Forest, Olga Fink

Monitoring the cracks in walls, roads and other types of infrastructure is essential to ensure the safety of a structure, and plays an important role in structural health monitoring. Automatic visual inspection allows an efficient, costeffective and safe h ...

Research Publishing2023

Detecting Anomalies and Obstacles in Road Scenes

Krzysztof Maciej Lis

We address the problem of segmenting anomalies and unusual obstacles in road scenes for the purpose of self-driving safety. The objects in question are not present in the common training sets as it is not feasible to collect and annotate examples for every ...

EPFL2023

Confidence Matters: Applications to Semantic Segmentation

Prabhu Teja Sivaprasad

The successes of deep learning for semantic segmentation can in be, in part, attributed to its scale: a notion that encapsulates the largeness of these computational architectures and the labeled datasets they are trained on. These resource requirements hi ...

EPFL2023

Revisiting Evaluation Metrics for Semantic Segmentation: Optimization and Evaluation of Fine-grained Intersection over Union

Devis Tuia, Zifu Wang

Semantic segmentation datasets often exhibit two types of imbalance: \textit{class imbalance}, where some classes appear more frequently than others and \textit{size imbalance}, where some objects occupy more pixels than others. This causes traditional eva ...

2023

CLIP the Gap: A Single Domain Generalization Approach for Object Detection

Mathieu Salzmann, Martin Pierre Engilberge, Vidit Vidit

Single Domain Generalization (SDG) tackles the problem of training a model on a single source domain so that it generalizes to any unseen target domain. While this has been well studied for image classification, the literature on SDG object detection remai ...

Ieee Computer Soc2023

Scale-Aware Test-Time Click Adaptation for Pulmonary Nodule and Mass Segmentation

Bo Du, Li Zhang, Zhigang Li, Jiancheng Yang

Pulmonary nodules and masses are crucial imaging features in lung cancer screening that require careful management in clinical diagnosis. Despite the success of deep learning-based medical image segmentation, the robust performance on various sizes of lesi ...

Springer International Publishing Ag2023

Practical computational imaging by use of spatiotemporal light modulation: from simulations to applications in biological microscopy

François Thierry M Marelli

Optical microscopy is an essential tool for biologists, who are often faced with the need to overcome the spatial and temporal resolution limitations of their devices to capture finer details. As upgrading imaging hardware is expensive, computational metho ...

EPFL2023

Rigidity-Aware Detection for 6D Object Pose Estimation

Mathieu Salzmann, Yinlin Hu, Rui Song, Jingyu Li

Most recent 6D object pose estimation methods first use object detection to obtain 2D bounding boxes before actually regressing the pose. However, the general object detection methods they use are ill-suited to handle cluttered scenes, thus producing poor ...

Ieee Computer Soc2023

Text as a Richer Source of Supervision in Semantic Segmentation Tasks

Devis Tuia, Valérie Zermatten, Lloyd Haydn Hughes, Javiera Francisca Castillo Navarro

This paper introduces TACOSS a text-image alignment approach that allows explainable land cover semantic segmentation by directly integrating semantic concepts encoded from texts. TACOSS combines convolutional neural networks for visual feature extraction ...

The Institute of Electrical and Electronics Engineers, Inc2023

SoDaCam: Software-defined Cameras via Single-Photon Imaging

Claudio Bruschini, Edoardo Charbon, Andrei Ardelean, Mohit Gupta

Reinterpretable cameras are defined by their post-processing capabilities that exceed traditional imaging. We present "SoDaCam" that provides reinterpretable cameras at the granularity of photons, from photon-cubes acquired by single-photon devices. Photon ...

Ieee Computer Soc2023