Protein target highlights in CASP15: Analysis of models by structure providers

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Engineering protein biosensors that sensitively respond to specific biomolecules by triggering precise cellular responses is a major goal of diagnostics and synthetic cell biology. Previous biosensor designs have largely relied on binding structurally well ...

The rapid progress in the field of deep learning has had a significant impact on protein design. Deep learning methods have recently produced a breakthrough in protein structure prediction, leading to the availability of high-quality models for millions of ...

Local and global inference methods have been developed to infer structural contacts from multiple sequence alignments of homologous proteins. They rely on correlations in amino acid usage at contacting sites. Because homologous proteins share a common ance ...

Serial crystallography at X-ray free-electron lasers (XFELs) permits the determination of radiation-damage free static as well as time-resolved protein structures at room temperature. Efficient sample delivery is a key factor for such experiments. Here, we ...

The present application relates to a computer-implemented systems and methods for protein interaction design using surface fingerprints. The method comprises predicting at least one target interface site with high binding propensity, wherein, optionally, t ...

Otoliths are calcium carbonate components of the stato-acoustical organ responsible for hearing and maintenance of the body balance in teleost fish. During their formation, control over, e.g., morphology and carbonate polymorph is influenced by complex ins ...

In this work, 99.999% pure magnesium (Mg) single microcrystals have been deformed in [0001] compression (c-axis compression) and [10 (1) over bar0] tension (c-axis contraction) conditions at room temperature and under loading rates ranging from 5 x 10(-4) ...

Protein-based therapeutics, such as monoclonal antibodies and cytokines, are important therapies for various pathophysiological conditions such as oncology, autoimmune disorders, and viral infections. However, the wide application of such protein therapeut ...

The present invention relates to a computer-implemented method for engineering the interaction between a protein and a cognate peptide that are capable of forming a molecular complex, wherein the method comprises (a) preparing in silico a library of test p ...

Solving native structures of such large molecules, like biomolecules, is often challenging, particularly due to the potentially infinite number of non-covalent interactions with water. In this thesis, we report the use of cold ion gas-phase action spectros ...

Protein target highlights in CASP15: Analysis of models by structure providers

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Computational design of dynamic receptor—peptide signaling complexes applied to chemotaxis

A new age in protein design empowered by deep learning

Impact of phylogeny on structural contact inference from protein sequence data

A multi-reservoir extruder for time-resolved serial protein crystallography and compound screening at X-ray free-electron lasers

Systems and methods for de novo design of protein interactions with learned surface fingerprints

First paleoproteome study of fossil fish otoliths and the pristine preservation of the biomineral crystal host

Response of magnesium microcrystals to c-axis compression and contraction loadings at low and high strain rates

Rational Design of Chemically Controlled Antibodies and Protein Therapeutics

Computer-implemented design of peptide:receptor signaling complexes for enhanced chemotaxis

Bridging Native and Intrinsic Structures of Microhydrated Biomolecules by Cold Ion Spectroscopy