Publications associées à Light-directed evolution of dynamic biological systems

Publications associées (11)

Investigating domain structures and superdomains in ferroelectric PbTiO3 based heterostructures on DyScO3

Duncan Thomas Lindsay Alexander, Pau Torruella Besa

This work focuses on the complex ferroelastic/ferroelectric domain structure in the prototypical ferroelectric PbTiO3 epitaxially strained on (110)o-oriented DyScO3 substrates, with a 22 nm-thick bottom SrRuO3 electrode. High quality epitaxial growth has b ...

2025

Advancing understanding and practical performance of machine learning interatomic potentials

Sergey Pozdnyakov

Atomistic machine learning has revolutionized atomistic modeling. Traditionally, molecular dynamics simulations relied on classical force fields or electronic structure calculations like Density Functional Theory. Classical force fields are fast but less p ...

EPFL2025

Computational design of soluble and functional membrane protein analogues

Christian Schellhaas, Lars Jeremy Dornfeld, Nicolas Manuel Goldbach, Bruno Emanuel Ferreira De Sousa Correia, Sandrine Madeleine Suzanne Georgeon, Stéphane Rosset, Casper Alexander Goverde, Martin Pacesa

De novo design of complex protein folds using solely computational means remains a substantial challenge1. Here we use a robust deep learning pipeline to design complex folds and soluble analogues of integral membrane proteins. Unique membrane topologies, ...

2024

Optimization Algorithms for Decentralized, Distributed and Collaborative Machine Learning

Anastasiia Koloskova

Distributed learning is the key for enabling training of modern large-scale machine learning models, through parallelising the learning process. Collaborative learning is essential for learning from privacy-sensitive data that is distributed across various ...

EPFL2024

Feature Representations for Automatic Meerkat Vocalization Classification

Mathew Magimai Doss, Eklavya Sarkar

Understanding evolution of vocal communication in social animals is an important research problem. In that context, beyond humans, there is an interest in analyzing vocalizations of other social animals such as, meerkats, marmosets, apes. While existing ap ...

2024

Chromatin modules and their implication in genomic organization and gene regulation

Judith Franziska Kribelbauer, Bart Deplancke, Guido Van Mierlo

Regulation of gene expression is a complex but highly guided process. While genomic technologies and computational approaches have allowed high-throughput mapping of cis-regulatory elements (CREs) and their interactions in 3D, their precise role in regulat ...

ELSEVIER SCIENCE LONDON2023

Deep excavation of the impact from endogenous and exogenous uncertainties on long-term energy planning

François Maréchal, Xiang Li

Endogenous and exogenous uncertainties exert significant influences on energy planning. In this study, we propose a systematic methodology to excavate the uncertainty space, by combining mix-integer linear programming (MILP), Monte Carlo simulation, and ma ...

ELSEVIER2023

SLC25A46 promotes mitochondrial fission and mediates resistance to lipotoxic stress in INS-1E insulin-secreting cells

Loïc Dayon, Andreas Wiederkehr

Glucose sensing in pancreatic D-cells depends on oxidative phosphorylation and mitochondria-derived signals that promote insulin secretion. Using mass spectrometry-based phosphoproteo-mics to search for downstream effectors of glucose-dependent signal tran ...

COMPANY BIOLOGISTS LTD2023

Susceptibility of enveloped and non-enveloped viruses to ultraviolet light-emitting diode (UV-LED) irradiation and implications for virus inactivation mechanisms

Shotaro Torii

Ultraviolet (UV) light-emitting diodes (UV-LEDs), a disinfection technology, efficiently inactivate pathogens in water. However, the assessment of UV-LED treatment and the mechanisms of UV inactivation on viruses (especially enveloped viruses) are limited. ...

ROYAL SOC CHEMISTRY2023

Frequent asymmetric migrations suppress natural selection in spatially structured populations

Anne-Florence Raphaëlle Bitbol, Alia Abbara

Natural microbial populations often have complex spatial structures. This can impact their evolution, in particular the ability of mutants to take over. While mutant fixation probabilities are known to be unaffected by sufficiently symmetric structures, ev ...

Oxford Univ Press2023

Overflow-free Compute Memories for Edge AI Acceleration

David Atienza Alonso, Giovanni Ansaloni, Alexandre Sébastien Julien Levisse, Flavio Ponzina, Marco Antonio Rios

Compute memories are memory arrays augmented with dedicated logic to support arithmetic. They support the efficient execution of data-centric computing patterns, such as those characterizing Artificial Intelligence (AI) algorithms. These architectures can ...

Assoc Computing Machinery2023