Publications associées à Microstructure informed tractography: pitfalls and open challenges

Publications associées (28)

Automated segmentation and labeling of subcutaneous mouse implants at 14.1T

Gilles Bioley, Dimitri Nestor Alice Van De Ville, Cristina Ramona Cudalbu Moldovan, Maria Giulia Preti, Nicolas Gninenko

Magnetic resonance imaging (MRI) is a valuable tool for studying subcutaneous implants in rodents, providing non-invasive insight into biomaterial conformability and longitudinal characterization. However, considerable variability in existing image analysi ...

FRONTIERS MEDIA SA2023

The inductive bias of deep learning: Connecting weights and functions

Guillermo Ortiz Jimenez

Years of a fierce competition have naturally selected the fittest deep learning algorithms. Yet, although these models work well in practice, we still lack a proper characterization of why they do so. This poses serious questions about the robustness, trus ...

EPFL2023

Axial and radial axonal diffusivities and radii from single encoding strongly diffusion-weighted MRI

Erick Jorge Canales Rodriguez, Marco Pizzolato

We enable the estimation of the per-axon axial diffusivity from single encoding, strongly diffusion-weighted, pulsed gradient spin echo data. Additionally, we improve the estimation of the per-axon radial diffusivity compared to estimates based on spherica ...

ELSEVIER2023

Brain structure-function coupling provides signatures for task decoding and individual fingerprinting

Dimitri Nestor Alice Van De Ville, Alessandra Griffa, Maria Giulia Preti, Enrico Amico, Raphaël Pierre Liégeois

Brain signatures of functional activity have shown promising results in both decoding brain states, meaning distinguishing between different tasks, and fingerprinting, that is identifying individuals within a large group. Importantly, these brain signature ...

ACADEMIC PRESS INC ELSEVIER SCIENCE2022

Mapping of Structure-Function Age-Related Connectivity Changes on Cognition Using Multimodal MRI

Dimitri Nestor Alice Van De Ville, Maria Giulia Preti

The relationship between age-related changes in brain structural connectivity (SC) and functional connectivity (FC) with cognition is not well understood. Furthermore, it is not clear whether cognition is represented via a similar spatial pattern of FC and ...

FRONTIERS MEDIA SA2022

Validating atlas-based lesion disconnectomics in multiple sclerosis: A retrospective multi-centric study

Reto Meuli, Tobias Kober, Bénédicte Marie Maréchal, Jonas Richiardi

The translational potential of MR-based connectivity modelling is limited by the need for advanced diffusion imaging, which is not part of clinical protocols for many diseases. In addition, where diffusion data is available, brain connectivity analyses rel ...

2021

Brain plasticity dynamics during tactile Braille learning in sighted subjects: Multi-contrast MRI approach

Richard Frackowiak

A growing body of empirical evidence supports the notion of diverse neurobiological processes underlying learning-induced plasticity changes in the human brain. There are still open questions about how brain plasticity depends on cognitive task complexity, ...

2021

Intra- and inter-hemispheric structural connectome in agenesis of the corpus callosum

Dimitri Nestor Alice Van De Ville, Lorena Gonçalves de Alcântara e Freitas Krikler, Vanessa Siffredi

Agenesis of the corpus callosum (AgCC) is a congenital brain malformation characterized by the complete or partial failure to develop the corpus callosum. Despite missing the largest white matter bundle connecting the left and right hemispheres of the brai ...

2021

Dynamic spatiotemporal patterns of brain connectivity reorganize across development

Patric Hagmann, Alessandra Griffa, Marie Schaer

Late human development is characterized by the maturation of high-level functional processes, which rely on reshaping of white matter connections, as well as synaptic density. However, the relationship between the whole-brain dynamics and the underlying wh ...

MIT PRESS2020

Exploring dynamic functional connectivity by incorporating prior knowledge of brain structure

Anjali Bagunu Tarun

The synchronized firing of distant neuronal populations gives rise to a wide array of functional brain networks that underlie human brain function. Given the enormous perception, learning, and cognition potential of the human brain, it is not surprising th ...

EPFL2020

Towards quantitative brain connectomics: microstructure informed tractography via convex optimization

Muhamed Barakovic

Tractography is the only non-invasive technique which is used to reconstruct the white mat- ter structural connectivity of the human brain. It relies on a specific Magnetic Resonance Imaging (MRI) acquisition, called diffusion MRI, which is sensitive to th ...

EPFL2019

Global tractography with embedded anatomical priors for quantitative connectivity analysis

Didrik Hans Malcolm Skiöldebrand, Jean-Philippe Thiran, Alessandro Daducci, Alia Lemkaddem

Tractography algorithms provide us with the ability to non-invasively reconstruct fiber pathways in the white matter (WM) by exploiting the directional information described with diffusion magnetic resonance. These methods could be divided into two major c ...

2014

Assessing feasibility and reproducibility of a bundle-specific framework on in vivo axon diameter estimates at 300mT/m

Jean-Philippe Thiran, Alessandro Daducci, Gabriel Girard, David Paul Roger Romascano, Maxime Descoteaux, Muhamed Barakovic, Jonathan Rafael Patino Lopez, Giorgio Innocenti

In vivo quantitative estimation of axon diameter in the white matter could bring new tools to study the structural and functional architecture of the brain. Recently, the feasibility of axon diameter estimation with diffusion-weighted MRI (DW-MRI) has been ...

2018

Whole-brain structural connectivity in temporal lobe epilepsy: a Diffusion Spectrum Imaging study

Jean-Philippe Thiran, Alessandro Daducci, Alessandra Griffa, Alia Lemkaddem, François Lazeyras

Introduction: Medial Temporal Lobe Epilepsy (mTLE) with hippocampal sclerosis is the most frequent cause of drug-resistant focal epilepsy in adults. These patients suffer from widespread subtle white matter abnormalities and abnormal functional connectivit ...

2012

Validation strategies for the interpretation of microstructure imaging using diffusion MRI

Giorgio Innocenti

Extracting microanatomical information beyond the image resolution of MRI would provide valuable tools for diagnostics and neuroscientific research. A number of mathematical models already suggest microstructural interpretations of diffusion MRI (dMRI) dat ...

2018

White matter maturation reshapes structural connectivity in the late developing human brain

Jean-Philippe Thiran, Patric Hagmann, Reto Meuli, Leila Cammoun, Leila Faiza Ben Hamida Cammoun

From toddler to late teenager, the macroscopic pattern of axonal projections in the human brain remains largely unchanged while undergoing dramatic functional modifications that lead to network refinement. These functional modifications are mediated by inc ...

National Academy of Sciences2010

Diffusion-weighted imaging evidence of altered white matter development from late childhood to early adulthood in Autism Spectrum Disorder

Djalel Eddine Meskaldji, Fikret Isik Karahanoglu

Autism Spectrum Disorder (ASD) is thought to reflect disrupted development of brain connectivity characterized by white matter abnormalities and dyscoordination of activity across brain regions that give rise to core features. But there is little consensus ...

2018

Essays on individual decision making under uncertainty

This research project is an experimental study of decision-making in very difficult contexts resembling those encountered in financial markets. The starting point was the empirical observation that financial assets are objects of a very complex kind. Speci ...

EPFL2009

Reducing false positives in tractography with microstructural and anatomical priors

Jean-Philippe Thiran, Alessandro Daducci, Gabriel Girard, Maxime Descoteaux, Muhamed Barakovic

Tractography has proven particularly effective for studying noninvasively the neuronal architecture of the brain but recent studies have showed that the high incidence of false positives can significantly bias any connectivity analysis. We present a novel ...

2018

Global brain connectivity analysis by diffusion MR tractography : algorithms, validation and applications

Xavier Gigandet

The human cerebral cortex consists of approximately 1010 neurons that are organized into a complex network of local circuits and long-range connections. During the past years there has been an increasing interest from the neuro-scientific community towards ...

EPFL2009