Current Practice in Software Development for Computational Neuroscience and How to Improve It

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Publications associées (30)

Lenstool-HPC: A High Performance Computing based mass modelling tool for cluster-scale gravitational lenses

Christoph Ernst René Schäfer, Jean-Paul Richard Kneib

With the upcoming generation of telescopes, cluster scale strong gravitational lenses will act as an increasingly relevant probe of cosmology and dark matter. The better resolved data produced by current and future facilities requires faster and more effic ...

ELSEVIER2020

Wannier90 as a community code: new features and applications

Nicola Marzari, Giovanni Pizzi, Marco Gibertini, Lorenzo Paulatto, Hyungjun Lee, Daniel John Gilles Marchand, Antimo Marrazzo, Samuel Poncé, Junfeng Qiao

Wannier90 is an open-source computer program for calculating maximally-localised Wannier functions (MLWFs) from a set of Bloch states. It is interfaced to many widely used electronic-structure codes thanks to its independence from the basis sets representi ...

2020

Challenges for biophysical modeling of microstructure

Ileana Ozana Jelescu

The biophysical modeling efforts in diffusion MRI have grown considerably over the past 25 years. In this review, we dwell on the various challenges along the journey of bringing a biophysical model from initial design to clinical implementation, identifyi ...

2020

The ONETEP linear-scaling density functional theory program

Edward Baxter Linscott

We present an overview of the onetep program for linear-scaling density functional theory (DFT) calculations with large basis set (plane-wave) accuracy on parallel computers. The DFT energy is computed from the density matrix, which is constructed from spa ...

AMER INST PHYSICS2020

A hybrid framework for industrial data storage and exploitation

Dimitrios Kyritsis, Foivos Psarommatis Giannakopoulos, Ioannis Tourkogiorgis

In this paper a hybrid framework is illustrated, with a software and hardware integration strategy, for an industrial platform that exploits features from a Relational Database (RDB) and Triplestore using the blackboard architectural pattern, ensuring effi ...

Elsevier2019

Development of an AFM-based nanomotion detection device for microbiological samples

Wojciech Chomicki

The main goals of this thesis pertain to the development of a device capable of detecting microorganism viability through monitoring the oscillations of a microscopic cantilever transducer, to improve the presently used device and to attempt to explain in ...

EPFL2019

SD-WISE: A Software-Defined WIreless SEnsor network

Angelos Christos Anadiotis

In this paper we introduce SD-WISE, a Software-Defined Wireless SEnsor networking solution for Wireless Sensor (and actuator) Networks (WSNs). SD-WISE has several unique features making it a flexible and expandable solution that can be applied in heterogen ...

ELSEVIER SCIENCE BV2019

The software and hardware architecture of the real-time protection of in-vessel components in JET-ILW

Patrick Blanchard, Basil Duval, Ambrogio Fasoli, Yves Martin, Richard Pitts, Olivier Sauter, Henri Weisen, Stefano Coda, Marco Wischmeier, Jan Horacek, Yann Camenen, Jonathan Graves, Duccio Testa, Mikhail Maslov, Javier García Hernández, David Pfefferlé, Pedro Camilo de Oliveira e Silva, Ana Francisca Leal Silva Soares, Dalziel Joseph Wilson, Jonathan Marc Philippe Faustin, Federico Nespoli, Hamish William Patten, Nicola Vianello, Antonio José Pereira de Figueiredo, Samuel Lanthaler, Liang Yao, Cristian Sommariva, Davide Galassi, Alessandro Pau, Yao Zhou, Otto Asunta, Bernhard Sieglin

For the first time, the JET operation in deuterium-tritium (D-T) plasma, which is scheduled to take place on JET in 2020, will be performed in the ITER mix of plasma-facing component materials. In view of the preparation of the DT campaign (DTE2), several ...

IOP Publishing Ltd2019

Scaling Functional Synthesis and Repair

Emmanouil Koukoutos

Program synthesis was first proposed a few decades ago, but in the last decade it has gained increased momentum in the research community. The increasing complexity of software has dictated the urgent need for improved supporting tools that verify the soft ...

EPFL2019

Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software

Michaël Unser, Daniel Sage, Ricardo Henriques, Thanh-An Michel Pham, Thomas Pengo, Seamus John Holden, Tomas Lukes, Anna Archetti, Silvia Colabrese, Anurag Agrawal

With the widespread uptake of two-dimensional (2D) and three-dimensional (3D) single-molecule localization microscopy (SMLM), a large set of different data analysis packages have been developed to generate super-resolution images. In a large community effo ...

2019

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