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Genetic Generalized Epilepsy (GGE) represents around 20% of adult epilepsies and involves widespread network dysfunction across both hemispheres. While abnormalities across functional networks are well-documented, the hierarchical organization of these networks in GGE remains unknown. Our goal was to investigate whether GGE alters this hierarchy estimated using gradient analysis based on EEG-informed connectome. We analyzed a high-density EEG dataset from 20 GGE patients and matched healthy controls (HC). Compared to HC, GGE patients had significantly less negative gradient scores in the frontoparietal network (FPN) in the secondary gradient of the beta frequency band (p=0.0201, FDR corrected, quantified as large effect size by Cliff’s delta: 0.52). Additionally, in the theta band, the secondary gradient scores in multiple networks were closely associated with epilepsy duration (Spearman’s |R|>0.50, all p