Publications associées à Temporal Variations in Soil Water Wetness Enhance Microbial Diversity

The cost of adaptability: resource availability constrains functional stability under pulsed disturbances

Global change exposes ecosystems to changes in the frequency, magnitude, and concomitancy of disturbances, which impact the composition and functioning of these systems. Here, we experimentally evaluate the effects of salinity disturbances and eutrophicati ...

Amer Soc Microbiology2024

Investigation of microbial community dynamics in soil during variable hydrological forcing

Simiao Wang

Climate change is expected to alter the temporal distribution of precipitation events, leading to prolonged drought periods and an increased frequency of extreme precipitation events. Changes in precipitation pattern will directly affect soil moisture dyna ...

EPFL2024

Global emergent responses of stream microbial metabolism to glacier shrinkage

Nicola Deluigi, Tom Ian Battin, Hannes Markus Peter, Michail Styllas, Tyler Joe Kohler, Massimo Bourquin

Most cryospheric ecosystems are energy limited. How their energetics will respond to climate change remains largely unknown. This is particularly true for glacier-fed streams, which interface with the cryosphere and initiate some of Earth's largest river s ...

Nature Portfolio2024

Reconstruction and analysis of genome-scale metabolic networks in single organisms and microbial communities

Evangelia Vagena

Microorganisms are a key component in the chain of life. They are essential for agriculture, produce a large proportion of oxygen, and play a central role in the cycle of elements. Microorganisms are widely used in the production of food and alcoholic beve ...

EPFL2024

Soil warming alters tree water use and canopy stomatal conductance in a mixed subtropical forest

Charlotte Grossiord, Christoph Bachofen

As air temperature and vapor pressure deficit (VPD) increase continuously, forests are losing more water through evapotranspiration, with large consequences for local and global hydrological cycles. In regions with high vegetation cover, soil warming can b ...

Elsevier2024

Spatially Explicit Linkages Between Redox Potential Cycles and Soil Moisture Fluctuations

Rizlan Bernier-Latmani, Manon Frutschi, Andrea Rinaldo, Paolo Benettin, Mitra Asadollahi, Simiao Wang, Filippo Miele

Reduction-oxidation cycles measured through soil redox potential (Eh) are associated with dynamic soil microbial activity. Understanding changes in the composition of, and resource use by, soil microbial communities requires Eh predictability under shiftin ...

American Geophysical Union2023

Linking Soil Structure, Hydraulic Properties, and Organic Carbon Dynamics: A Holistic Framework to Study the Impact of Climate Change and Land Management

Sara Bonetti

Climate change and unsustainable land management practices have resulted in extensive soil degradation, including alteration of soil structure (i.e., aggregate and pore size distributions), loss of soil organic carbon, and reduction of water and nutrient h ...

2023

Interactions between beech and oak seedlings can modify the effects of hotter droughts and the onset of hydraulic failure

Charlotte Grossiord, Eugénie Isabelle Mas, Fernando Valladares, Hervé Cochard, Margaux Clara Lou Didion-Gency, Janisse Deluigi

center dot Mixing species with contrasting resource use strategies could reduce forest vulnerability to extreme events. Yet, how species diversity affects seedling hydraulic responses to heat and drought, including mortality risk, is largely unknown. Using ...

Wiley2023

Global Mapping of Potential and Climatic Plant‐Available Soil Water

Dani Or, Sara Bonetti

The estimation of plant-available soil water (PASW) is essential to quantify transpiration fluxes, the onset of heatwaves, irrigation water management, land-use decisions, vegetation ecology, and land surface memory in climate models. PASW is the amount of ...

2023

Metabolism of the symbiotic jellyfish Cassiopea in a changing environment

Gaëlle Delphine Toullec

Ocean warming and other anthropogenic impacts have led to a global decline in many photosymbiotic cnidarians, most notably reef-building corals. But some species of the symbiotic and (sub-)tropical upside-down jellyfish Cassiopea are increasingly reported ...

EPFL2023

Interspecies interactions determine growth dynamics of biopolymer- degrading populations in microbial communities

Martin Ackermann

Microbial communities perform essential ecosystem functions such as the remineralization of organic carbon that exists as biopolymers. The first step in mineralization is performed by biopolymer degraders, which harbor enzymes that can break down polymers ...

National Academy of Sciences2023

Catchment characteristics and seasonality control the composition of microbial assemblages exported from three outlet glaciers of the Greenland Ice Sheet

Tyler Joe Kohler, Martina Andrea Schön

Glacial meltwater drains into proglacial rivers where it interacts with the surrounding landscape, collecting microbial cells as it travels downstream. Characterizing the composition of the resulting microbial assemblages in transport can inform us about i ...

Frontiers Media SA2022

Improved framework to estimate travel time and derived distributions in hydrological control volumes

Mitra Asadollahi

Crossing properties of soil saturation, defined as the duration and excursion of soil saturation below and above certain thresholds, are key variables to ecosystem functioning and evolution by primarily influencing the plant and soil microbes physiological ...

EPFL2022

Benthic Biofilms in Glacier-Fed Streams from Scandinavia to the Himalayas Host Distinct Bacterial Communities Compared with the Streamwater

Leïla Ezzat, Vincent Henri De Staercke, Tom Ian Battin, Paraskevi Pramateftaki, Hannes Markus Peter, Emmy Marie Oppliger, Jade Brandani, Matteo Tolosano, Michail Styllas, Tyler Joe Kohler, Stylianos Fodelianakis, Massimo Bourquin, Martina Andrea Schön, Susheel Bhanu Busi, Grégoire Marie Octave Edouard Michoud, Virginia Tadei

Microbial life in glacier-fed streams (GFSs) is dominated by benthic biofilms which fulfill critical ecosystem processes. However, it remains unclear how the bacterial communities of these biofilms assemble in stream ecosystems characterized by rapid turno ...

AMER SOC MICROBIOLOGY2022

Model-based scale-up of a continuously operated consolidated bioprocess based on a microbial consortium for the production of ethanol

David Beat Dempfle

This work demonstrated that consolidated bioprocessing is a promising concept for conversion of lignocellulose to ethanol at industrial scale. CBP offers great cost saving potential, is feasible to be operated continuously and may be scaled up due to exten ...

EPFL2022

Photosynthetic acclimation and sensitivity to short- and long-term environmental changes in a drought-prone forest

Charlotte Grossiord

Future climate will be characterized by an increase in frequency and duration of drought and warming that exacerbates atmospheric evaporative demand. How trees acclimate to long-term soil moisture changes and whether these long-term changes alter trees' se ...

OXFORD UNIV PRESS2022

Dynamic Effective Porosity Explains Laboratory Experiments on Watertable Fluctuations in Coastal Unconfined Aquifers

David Andrew Barry, Zhaoyang Luo

Watertable fluctuations are a characteristic feature of coastal unconfined aquifers. They interact with the vadose zone creating a dynamic effective porosity, for which a new (empirical) expression is proposed based on a dimensionless parameter related to ...

2023

Nutrient Availability Does Not Affect Community Assembly in Root-Associated Fungi but Determines Fungal Effects on Plant Growth

Florian Frédéric Vincent Breider, Bing Bai

Nonmycorrhizal root-colonizing fungi are key determinants of plant growth, driving processes ranging from pathogenesis to stress alleviation. Evidence suggests that they might also facilitate host access to soil nutrients in a mycorrhiza-like manner, but t ...

2022

High-throughput Microfluidic Platforms for S. cerevisiae Single Cell Studies

Hon Ming Andrew Yip

Cells consume extra-cellular nutrients and resources to maintain cellular fitness. Extra-cellular conditions vary over time. Cellular programs encoded in genes adjust to adapt to the environments. Gene regulatory networks (GRNs) have evolved to be responsi ...

EPFL2022

The microbiome of cryospheric ecosystems

Leïla Ezzat, Tom Ian Battin, Hannes Markus Peter, Tyler Joe Kohler, Stylianos Fodelianakis, Massimo Bourquin, Susheel Bhanu Busi, Grégoire Marie Octave Edouard Michoud

The cryosphere includes those parts of Earth where water or soil is frozen, such as snow, ice, glaciers and permafrost soils. Here, the authors present a global inventory of cryospheric microbial communities and their genetic repertoires. ...

Nature Portfolio2022