Publications associées à Classification of selectively constrained DNA elements using feature vectors and rule-based classifiers

Publications associées (47)

A comparative analysis of gene expression profiling by statistical and machine learning approaches

Motivation Many machine learning (ML) models developed to classify phenotype from gene expression data provide interpretations for their decisions, with the aim of understanding biological processes. For many models, including neural networks, interpretati ...

OXFORD UNIV PRESS2025

Overcoming Distribution Shifts and Imbalance Challenges in Representation Learning for Deep Regression Models

Ismail Nejjar

Deep learning has shown remarkable potential for industrial applications, particularly in predictive maintenance and condition monitoring. A key challenge in this domain is prognostics, specifically predicting the Remaining Useful Life (RUL) of assets - a ...

EPFL2025

Weighting Pseudo-labels via High-Activation Feature Index Similarity and Object Detection for Semi-supervised Segmentation

Minh Hieu Lê

Semi-supervised semantic segmentation methods leverage unlabeled data by pseudo-labeling them. Thus the success of these methods hinges on the reliability of the pseudo-labels. Existing methods mostly choose high-confidence pixels in an effort to avoid err ...

Springer Science and Business Media Deutschland GmbH2025

On the Perspectives of Image-to-Lidar Constraints in Dynamic Network Optimisation

Thibaut Stoltz, Jan Skaloud, Davide Antonio Cucci, Laurent Valentin Jospin, Kyriaki Mouzakidou

The evolution of airborne mapping witnesses the introduction of hybrid lidar-camera systems to enhance data collection, i.e. to obtain simultaneously high-density point-cloud and texture. Yet, the common adjustment of both optical data streams is a nontriv ...

International Society for Photogrammetry and Remote Sensing2025

Exploiting Representation Similarities in Self-Supervised Learning for Vision Tasks

Thomas Grégoire Stegmüller

Recent progress in computer vision has been driven by a simple yet transformative observation: the potential of 30-year-old neural networks can be unlocked by massively scaling their parameters and the amount of human-labeled training data. This breakthrou ...

EPFL2025

A boundary-defining protein facilitates megabase-scale regulatory chromosomal loop formation in Drosophila neurons

Julien Dorier

Regulatory elements, such as enhancers and silencers, control transcription by establishing physical proximity to target gene promoters. Neurons in flies and mammals exhibit long-range three-dimensional genome contacts, proposed to connect genes with dista ...

Cold Spring Harbor Laboratory2025

Genome-wide allele-specific expression in multi-tissue samples from healthy male baboons reveals the transcriptional complexity of mammals

Giorgia Benegiamo

Allele-specific expression (ASE) is pivotal in understanding the genetic underpinnings of phenotypic variation within species, differences in disease susceptibility, and responses to environmental factors. We processed 11 different tissue types collected f ...

2025

Self-Supervised Learning for Patient Stratification and Survival Analysis in Computational Pathology: An Application to Colorectal Cancer

Christian Robert Abbet

Over the years, clinical institutes accumulated large amounts of digital slides from resected tissue specimens. These digital images, called whole slide images (WSIs), are high-resolution tissue snapshots that depict the complex interaction of cells at the ...

EPFL2023

Classifier-free diffusion-based weakly-supervised approach for health indicator derivation in rotating machines: Advancing early fault detection and condition monitoring

Olga Fink, Gaëtan Michel Frusque

Deriving health indicators of rotating machines is crucial for their maintenance. However, this process is challenging for the prevalent adopted intelligent methods since they may take the whole data distributions, not only introducing noise interference b ...

2025

Segmenting Without Annotating: Crack Segmentation and Monitoring via Post-Hoc Classifier Explanations

Devis Tuia, Olga Fink, Florent Evariste Forest, Hugo Laurent Pascal Porta

Monitoring the cracks in walls, roads and other types of infrastructure is essential to ensure the safety of a structure, and plays an important role in structural health monitoring. Automatic visual inspection allows an efficient, costeffective and safe h ...

Research Publishing2023

Towards Robust Monitoring of the Laser Powder Bed Fusion Process based on Acoustic Emission combined with Machine Learning Solutions

Rita Drissi Daoudi

Laser Powder Bed Fusion (LPBF) is an Additive Manufacturing (AM) process consolidating parts layer by layer, from a metallic powder bed. It allows no limitation in terms of geometry and is therefore of particular interest to various industries. Metallic LP ...

EPFL2023

Learning From Heterogeneous Data Based on Social Interactions Over Graphs

Ali H. Sayed, Stefan Vlaski, Virginia Bordignon

This work proposes a decentralized architecture, where individual agents aim at solving a classification problem while observing streaming features of different dimensions and arising from possibly different distributions. In the context of social learning ...

IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC2023

Enhancing Epileptic Seizure Detection with EEG Feature Embeddings

Mahsa Shoaran, Bingzhao Zhu

Epilepsy is one of the most prevalent brain disorders that disrupts the lives of millions worldwide. For patients with drug-resistant seizures, there exist implantable devices capable of monitoring neural activity, promptly triggering neurostimulation to r ...

ArXiv2023

Supervised learning and inference of spiking neural networks with temporal coding

Ana Stanojevic

The way biological brains carry out advanced yet extremely energy efficient signal processing remains both fascinating and unintelligible. It is known however that at least some areas of the brain perform fast and low-cost processing relying only on a smal ...

EPFL2023

Robust Outlier Rejection for 3D Registration with Variational Bayes

Mathieu Salzmann, Jiancheng Yang, Zheng Dang, Zhen Wei

Learning-based outlier (mismatched correspondence) rejection for robust 3D registration generally formulates the outlier removal as an inlier/outlier classification problem. The core for this to be successful is to learn the discriminative inlier/outlier f ...

Ieee Computer Soc2023

Topics in statistical physics of high-dimensional machine learning

Hugo Chao Cui

In the past few years, Machine Learning (ML) techniques have ushered in a paradigm shift, allowing the harnessing of ever more abundant sources of data to automate complex tasks. The technical workhorse behind these important breakthroughs arguably lies in ...

EPFL2024

Error scaling laws for kernel classification under source and capacity conditions

Lenka Zdeborová, Florent Gérard Krzakala, Bruno Loureiro, Hugo Chao Cui

In this manuscript we consider the problem of kernel classification. While worst-case bounds on the decay rate of the prediction error with the number of samples are known for some classifiers, they often fail to accurately describe the learning curves of ...

2023

Asymptotics of feature learning in two-layer networks after one gradient-step

Lenka Zdeborová, Florent Gérard Krzakala, Bruno Loureiro, Hugo Chao Cui, Yatin Dandi, Luca Pesce, Yue Lu

In this manuscript, we investigate the problem of how two-layer neural networks learn features from data, and improve over the kernel regime, after being trained with a single gradient descent step. Leveraging the insight from (Ba et al., 2022), we model t ...

2024

Breaking the Curse of Dimensionality in Deep Neural Networks by Learning Invariant Representations

Leonardo Petrini

Artificial intelligence, particularly the subfield of machine learning, has seen a paradigm shift towards data-driven models that learn from and adapt to data. This has resulted in unprecedented advancements in various domains such as natural language proc ...

EPFL2023

Informed Graph Learning By Domain Knowledge Injection and Smooth Graph Signal Representation

Olga Fink, Lukas Kühn, Gaëtan Michel Frusque, Keivan Faghih Niresi

Graph signal processing represents an important advancement in the field of data analysis, extending conventional signal processing methodologies to complex networks and thereby facilitating the exploration of informative patterns and structures across var ...

IEEE2024