Theoretical and Experimental Studies of Dendritic Metacommunities

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Scalable semantic 3D mapping of coral reefs with deep learning

Anders Meibom, Devis Tuia, Guilhem Maurice Louis Banc-Prandi, Jonathan Paul Sauder

Coral reefs are among the most diverse ecosystems on our planet, and essential to the livelihood of hundreds of millions of people who depend on them for food security, income from tourism and coastal protection. Unfortunately, most coral reefs are existen ...

2024

Social media and deep learning reveal specific cultural preferences for biodiversity

Devis Tuia

Social media has created new opportunities to map cultural ecosystem services (CES) related to biodiversity at large scales. However, using these novel data to understand people's preferences in relation to these CES remains a challenge. To address this, w ...

2023

Homogeneous Environmental Selection Structures the Bacterial Communities of Benthic Biofilms in Proglacial Floodplain Streams

Tom Ian Battin, Hannes Markus Peter, Tyler Joe Kohler, Susheel Bhanu Busi, Grégoire Marie Octave Edouard Michoud, Stylianos Fodelianakis, Massimo Bourquin, Leïla Ezzat, Jade Brandani

Streams draining proglacial floodplains harbor benthic biofilms comprised of diverse microbial communities. These high-mountain ecosystems are rapidly changing with climate warming, and it is therefore critical to better understand the mechanisms underlyin ...

AMER SOC MICROBIOLOGY2023

Ancestral genome reconstruction enhances transposable element annotation by identifying degenerate integrants

Wayo Matsushima, Didier Trono, Evaristo Jose Planet Letschert

Growing evidence indicates that transposable elements (TEs) play important roles in evolution by providing genomes with coding and non-coding sequences. Identification of TE-derived functional elements, however, has relied on TE annotations in individual s ...

2024

Regional uniqueness of tree species composition and response to forest loss and climate change

Devis Tuia, Nina Marion Aurélia Van Tiel

The conservation and restoration of forest ecosystems require detailed knowledge of the native plant compositions. Here, we map global forest tree composition and assess the impacts of historical forest cover loss and climate change on trees. The global oc ...

Nature Portfolio2024

Interactions between beech and oak seedlings can modify the effects of hotter droughts and the onset of hydraulic failure

Charlotte Grossiord, Eugénie Isabelle Mas, Janisse Deluigi, Margaux Clara Lou Didion-Gency

center dot Mixing species with contrasting resource use strategies could reduce forest vulnerability to extreme events. Yet, how species diversity affects seedling hydraulic responses to heat and drought, including mortality risk, is largely unknown. Using ...

Wiley2023

Morphological processes and potential for lacustrine delta restoration

Alexandre Philippe Louis Antoine Fourrier, Giovanni De Cesare, Stéphanie Joëlle André

Most lacustrine deltas are nowadays highly anthropized systems. River training works during past centuries considered rivers mainly as vectors of water and sediments from a point source to a sink. However, numerous problems have been identified by resident ...

2024

Stay close, but not too close: aerial image analysis reveals patterns of social distancing in seal colonies

Devis Tuia, Benjamin Alexander Kellenberger

Many species aggregate in dense colonies. Species-specific spatial patterns provide clues about how colonies are shaped by various (a)biotic factors, including predation, temperature regulation or disease transmission. Using aerial imagery, we examined the ...

2023

Vers un projet territorial du vivant L'outil des réseaux écologiques comme projet urbanistique de revitalisation du paysage agricole

Marine Françoise Jeannine Villaret

The aim of my thesis is to provide urban architects and planners with working theoretical elements territorial project of the living. The living and the socio-ecological transition are key concepts in the nature and people paradigm, which asserts a human-n ...

EPFL2024