Publications associées à Linking soil's volatilome to microbes and plant roots highlights the importance of microbes as emitters of belowground volatile signals

Investigation of microbial community dynamics in soil during variable hydrological forcing

Climate change is expected to alter the temporal distribution of precipitation events, leading to prolonged drought periods and an increased frequency of extreme precipitation events. Changes in precipitation pattern will directly affect soil moisture dyna ...

EPFL2024

Reconstruction and analysis of genome-scale metabolic networks in single organisms and microbial communities

Evangelia Vagena

Microorganisms are a key component in the chain of life. They are essential for agriculture, produce a large proportion of oxygen, and play a central role in the cycle of elements. Microorganisms are widely used in the production of food and alcoholic beve ...

EPFL2024

Fungal community composition predicts forest carbon storage at a continental scale

Nina Marion Aurélia Van Tiel

Forest soils harbor hyper-diverse microbial communities which fundamentally regulate carbon and nutrient cycling across the globe. Directly testing hypotheses on how microbiome diversity is linked to forest carbon storage has been difficult, due to a lack ...

Nature Portfolio2024

Tree water uptake patterns across the globe

Charlotte Grossiord, Christoph Bachofen

Plant water uptake from the soil is a crucial element of the global hydrological cycle and essential for vegetation drought resilience. Yet, knowledge of how the distribution of water uptake depth (WUD) varies across species, climates, and seasons is scarc ...

Wiley2024

Soil warming alters tree water use and canopy stomatal conductance in a mixed subtropical forest

Charlotte Grossiord, Christoph Bachofen

As air temperature and vapor pressure deficit (VPD) increase continuously, forests are losing more water through evapotranspiration, with large consequences for local and global hydrological cycles. In regions with high vegetation cover, soil warming can b ...

Elsevier2024

Spatiotemporal Dynamics of Flow and Hydrochemistry in Drainage Networks

Izabela Bujak-Ozga

Despite their high ecological value, non-perennial streams have received less attention than their perennial counterparts. This doctoral thesis addresses this disparity by advancing knowledge on the dynamics of the drainage density and hydrologic processes ...

EPFL2024

Multi-well plate lid for single-step pooling of 96 samples for high-throughput barcode-based sequencing

Bart Deplancke, Daniel Migliozzi, Hüseyin Baris Atakan, Mustafa Demir, Riccardo Dainese, Daniel Alpern, Dariia Gudkova, Gilles Weder

High-throughput transcriptomics is of increasing fundamental biological and clinical interest. The generation of molecular data from large collections of samples, such as biobanks and drug libraries, is boosting the development of new biomarkers and treatm ...

Springer2024

Comparison of Three Viral Nucleic Acid Preamplification Pipelines for Sewage Viral Metagenomics

Tamar Kohn, Xavier Fernandez Cassi

Viral metagenomics is a useful tool for detecting multiple human viruses in urban sewage. However, more refined protocols are required for its effective use in disease surveillance. In this study, we investigated the performance of three different preampli ...

2024

X-ray chemical imaging for assessing redox microsites within soils and sediments

Vincent Noel, Meret Aeppli

Redox reactions underlie several biogeochemical processes and are typically spatiotemporally heterogeneous in soils and sediments. However, redox heterogeneity has yet to be incorporated into mainstream conceptualizations and modeling of soil biogeochemist ...

Frontiers Media Sa2024

Linking Soil Structure, Hydraulic Properties, and Organic Carbon Dynamics: A Holistic Framework to Study the Impact of Climate Change and Land Management

Sara Bonetti

Climate change and unsustainable land management practices have resulted in extensive soil degradation, including alteration of soil structure (i.e., aggregate and pore size distributions), loss of soil organic carbon, and reduction of water and nutrient h ...

2023

Consider the Anoxic Microsite: Acknowledging and Appreciating Spatiotemporal Redox Heterogeneity in Soils and Sediments

Vincent Noel, Meret Aeppli

Reduction-oxidation (redox) reactions underlie essentially all biogeochemical cycles. Like most soil properties and processes, redox is spatiotemporally heterogeneous. However, unlike other soil features, redox heterogeneity has yet to be incorporated into ...

AMER CHEMICAL SOC2023

Global Mapping of Potential and Climatic Plant‐Available Soil Water

Dani Or, Sara Bonetti

The estimation of plant-available soil water (PASW) is essential to quantify transpiration fluxes, the onset of heatwaves, irrigation water management, land-use decisions, vegetation ecology, and land surface memory in climate models. PASW is the amount of ...

2023

Influence of a lossy ground on the lightning performance of overhead transmission lines

Farhad Rachidi-Haeri, Rafael Silva Alipio

This paper investigates the impact of incorporating both displacement currents and frequency-dependent soil parameters in the calculation of the ground-return impedance for the determination of the backflashover rate of 138 kV and 230 kV overhead transmiss ...

Elsevier2023

Improving planar optode lifetime: encapsulation and optical release of pH-sensing optodes and assessment of their lifetime in situ

Victoria Alexandrine Julia Suzanne Marthe Fay

PurposePlanar fluorescent optodes are important tools for probing key parameters, such as the soil pH, O2 level, and CO2 level, associated with the biology and biochemistry process in the rhizosphere. In this paper, we address an important limitation of ex ...

SPRINGER HEIDELBERG2023

Spatially Explicit Linkages Between Redox Potential Cycles and Soil Moisture Fluctuations

Rizlan Bernier-Latmani, Manon Frutschi, Andrea Rinaldo, Paolo Benettin, Mitra Asadollahi, Simiao Wang, Filippo Miele

Reduction-oxidation cycles measured through soil redox potential (Eh) are associated with dynamic soil microbial activity. Understanding changes in the composition of, and resource use by, soil microbial communities requires Eh predictability under shiftin ...

American Geophysical Union2023

Fungal Planet description sheets: 1478-1549

Michele Saba, Sanjeev Kumar, Guilhem Maurice Louis Banc-Prandi

Novel species of fungi described in this study include those from various countries as follows: Australia, Aschersonia mackerrasiae on whitefly, Cladosporium corticola on bark of Melaleuca quinquenervia, Penicillium nudgee from soil under Melaleuca quinque ...

Leiden2023

Water use efficiency: A review of spatial and temporal variability

Gabriele Manoli, Sara Bonetti

Water Use Efficiency (WUE) expresses the trade-off between carbon assimilation (or subsequent carbon storage) and water release, two concurrent gas fluxes essential for plant functioning. Here, we review metrics that have been introduced to quantify WUE ac ...

Elsevier2023

Data-driven 1D wave propagation for site response analysis

Jean-François Molinari, Sacha Zenon Wattel, Antonio Joaquin Garcia Suarez

Prediction of ground motion triggered by earthquakes is a prime concern for both the seismology community and geotechnical earthquake engineering one. The subfield occupied with such a problem is termed site response analysis (SRA), its one-dimensional fla ...

WILEY2023

Modeling, analysis, and design of complex biological networks

Mohammadomid Oftadeh

Automating experimental procedures has resulted in an unprecedented increase in the volume of generated data, which, in turn, has caused an accumulation of unprocessed data. As a result, the need to develop tools to analyze data systematically has been ris ...

EPFL2023

Optimised set of oligonucleotides for bulk rna barcoding and sequencing

Bart Deplancke, Riccardo Dainese, Daniel Alpern, Vincent Roland Julien Gardeux

The present invention relates generally to the field of nucleic acid sequencing and provides oligonucleotide molecules and barcodes contained therein. These oligonucleotide molecules and barcodes molecules are useful in sequencing to identify and resolve e ...

2023