Thanh-An Michel Pham

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Quantitative phase imaging (QPI) is an emerging label-free technique that produces images containing morphological and dynamical information without contrast agents. Unfortunately, the phase is wrapped in most imaging system. Phase unwrapping is the comput ...

Optical diffraction tomography is an effective tool to estimate the refractive indices of unknown objects. It proceeds by solving an ill-posed inverse problem for which the wave equation governs the scattering events. The solution has traditionally been de ...

The topic of this thesis is the development of new algorithmic reconstruction methods for quantitative phase imaging (QPI). In the past decade, advanced QPI has emerged as a valuable tool to study label-free biological samples and uncover their 3D structur ...

Optical diffraction tomography (ODT) allows one to quantitatively measure the distribution of the refractive index of the sample. It relies on the resolution of an inverse scattering problem. Due to the limited range of views as well as optical aberrations ...

Optical projection tomography (OPT) is a powerful tool for biomedical studies. It achieves 3D visualization of mesoscopic biological samples with high spatial resolution using conventional tomographic-reconstruction algorithms. However, various artifacts d ...

GlobalBioIm is an open-source MATLAB (R) library for solving inverse problems. The library capitalizes on the strong commonalities between forward models to standardize the resolution of a wide range of imaging inverse problems. Endowed with an operator-al ...

Single-molecule localization microscopy (SMLM) is a powerful method for the imaging of cellular structures. This modality delivers nanoscale resolution by sequentially activating a subset of fluorescent molecules and by extracting their super-resolved posi ...

We propose the use of Flat Metric to assess the performance of reconstruction methods for single-molecule localization microscopy (SMLM) in scenarios where the ground-truth is available. Flat Metric is intimately related to the concept of optimal transport ...

A broad class of imaging modalities involve the resolution of an inverse-scattering problem. Among them, three-dimensional optical diffraction tomography (ODT) comes with its own challenges. These include a limited range of views, a large size of the sampl ...

Single-molecule localization microscopy (SMLM) is a fluorescence microscopy technique that achieves super-resolution imaging by sequentially activating and localizing random sparse subsets of fluorophores. Each activated fluorophore emits light that then s ...

With the widespread uptake of two-dimensional (2D) and three-dimensional (3D) single-molecule localization microscopy (SMLM), a large set of different data analysis packages have been developed to generate super-resolution images. In a large community effo ...

Thanh-An Michel Pham

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Robust Phase Unwrapping via Deep Image Prior for Quantitative Phase Imaging

Deep-learning projector for optical diffraction tomography

Nonlinear Inverse Problems in Quantitative Phase Imaging

Adaptive Regularization For Three-Dimensional Optical Diffraction Tomography

Mechanical artifacts in optical projection tomography: classification and automatic calibration

Pocket guide to solve inverse problems with GlobalBioIm

Optical diffraction tomography from single-molecule localization microscopy

Optimal-Transport-Based Metric for SMLM

Three-Dimensional Optical Diffraction Tomography With Lippmann-Schwinger Model

Diffraction Tomography from Single-Molecule Localization Microscopy: Numerical Feasibility

Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software

A method for assessing the fidelity of optical diffraction tomography reconstruction methods using structured illumination

User-Friendly Building of Reconstruction Algorithms for Solving Inverse Problems