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Christof Holliger

Cette personne a quitté l’EPFL

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Publications associées (95)

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Influence of Mass-Transfer Limitations on Carbon Isotope Fractionation during Microbial Dechlorination of Trichloroethene

Christof Holliger

Mass transfer of organic contaminants from nonaqueous phase liquids to the aqueous phase can significantly modulate the observable carbon isotope fractionation behavior associated with contaminant transformation. We evaluated the effects of kinetic interph ...

2009

Reductive dechlorination of chlorofluorocarbons and hydrochlorofluorocarbons in sewage sludge and aquifer sediment microcosms

Christof Holliger, Christian Balsiger

The reductive transformation of the 10 most-widely distributed fluorinated volatile compounds and of tetrachloroethene was investigated for up to 177 days under anaerobic conditions in sewage sludge and aquifer sediment slurries. Concentrations of parent c ...

Elsevier2005

Disentangle genus microdiversity within a complex microbial community by using a multi-distance long-read binning method: example of Candidatus Accumulibacter

Christof Holliger, Julien Maillard, Aline Sondra Adler, Simon Marius Jean Poirier

Complete genomes can be recovered from metagenomes by assembling and binning DNA sequences into metagenome assembled genomes (MAGs). Yet, the presence of microdiversity can hamper the assembly and binning processes, possibly yielding chimeric, highly fragm ...

WILEY2022

Organic substrate diffusibility governs microbial community composition, nutrient removal performance and kinetics of granulation of aerobic granular sludge

Christof Holliger

Basic understanding of formation of aerobic granular sludge (AGS) has mainly been derived from labscale systems with simple influents containing only highly diffusible volatile fatty acids (VFA) as organic substrate. This study compares start-up of AGS sys ...

2019

Buffering soil-water acidity in chlorinated solvent bioremediation schemes

David Andrew Barry, Christof Holliger, Alessandro Brovelli, Clare Robinson, Elsa Marina Lacroix

Chlorinated solvents form a significant part of groundwater contamination worldwide. They are difficult to remove via physical means, and anaerobic source-zone remediation based on provision of fermentable e-donor is an attractive clean-up dechlorination o ...

International Union of Soil Sciences2010

Bacterial versus fungal laccase: potential for micropollutant degradation

David Andrew Barry, Christof Holliger, Julien Maillard, Jonas Margot

Relatively high concentrations of micropollutants in municipal wastewater treatment plant (WWTP) effluents underscore the necessity to develop additional treatment steps prior to discharge of treated wastewater. Microorganisms that produce unspecific oxida ...

2013

PyroTRF-ID: a novel bioinformatics methodology for the affiliation of terminal-restriction fragments using 16S rRNA gene pyrosequencing data

Christof Holliger, Julien Maillard, Jacques Rougemont, Pierre Rossi, David Gregory Weissbrodt, Noam Shani, Lucas Sinclair

Background: In molecular microbial ecology, massive sequencing is gradually replacing classical fingerprinting techniques such as terminal-restriction fragment length polymorphism (T-RFLP) combined with cloning-sequencing for the characterization of microb ...

BioMed Central2012

Stoichiometry of the Gene Products From the Tetrachloroethene Reductive Dehalogenase Operon pceABCT

Christof Holliger, Julien Maillard, Adrian Schmid, Lorenzo Cimmino

Organohalide respiration (OHR) is a bacterial anaerobic process that uses halogenated compounds, e.g., tetrachloroethene (PCE), as terminal electron acceptors. Our model organisms are Dehalobacter restrictus strain PER-K23, an obligate OHR bacterium (OHRB) ...

Frontiers Media SA2022

Role of ammonia-oxidizing bacteria in micropollutant removal from wastewater with aerobic granular sludge

David Andrew Barry, Christof Holliger, Jonas Margot, Samuel Lochmatter

Nitrifying wastewater treatment plants (WWTPs) are more efficient than non-nitrifying WWTPs to remove several micropollutants such as pharmaceuticals and pesticides. This may be related to the activity of nitrifying organisms, such as ammonia-oxidizing bac ...

IWA Publishing2016

Improving Inter-Laboratory Reproducibility in Measurement of Biochemical Methane Potential (BMP)

Christof Holliger

Biochemical methane potential (BMP) tests used to determine the ultimate methane yield of organic substrates are not sufficiently standardized to ensure reproducibility among laboratories. In this contribution, a standardized BMP protocol was tested in a l ...

2020

Phage-dependent variability of Candidatus ‘Accumulibacter phosphatis’ populations in aerobic granular sludge

Christof Holliger, Julien Maillard, Jacques Rougemont, Aline Sondra Adler

During the past 20 years, aerobic granular sludge (AGS) has been extensively studied with the aim to develop an attractive alternative to conventional activated sludge for wastewater treatment. The phosphate-accumulating organism (PAO) Candidatus ‘Accumuli ...

2015

Use of silicate minerals for long-term pH control during reductive dechlorination of high tetrachloroethene concentrations in continuous flow-through columns

David Andrew Barry, Christof Holliger, Julien Maillard, Alessandro Brovelli, Emmanuelle Rohrbach, Elsa Marina Lacroix

The long-term buffering potential of three silicate minerals (diopside, fayalite and forsterite) present as fine particles in porous quartz sand medium was evaluated in flow-through column experiments over a period of 6.5 months. The columns were operated ...

Elsevier2014

Modeling Hydraulic Transport and Anaerobic Uptake by PAOs and GAOs During Wastewater Feeding in EBPR Granular Sludge Reactors

Christof Holliger, David Gregory Weissbrodt

New-generation bioprocesses using granular sludge aim for a high-rate removal of nutrients from wastewater with low footprint. Achieving enhanced biological phosphorus removal (EBPR) relies on the design of sludge beds and wastewater feeding conditions to ...

Wiley-Blackwell2017

Control of groundwater pH during bioremediation: Improvement and validation of a geochemical model to assess the buffering potential of ground silicate minerals

David Andrew Barry, Christof Holliger, Alessandro Brovelli, Elsa Marina Lacroix

Accurate control of groundwater pH is of critical importance for in situ biological treatment of chlorinated solvents. The use of ground silicate minerals mixed with groundwater is an appealing buffering strategy as silicate minerals may act as long-term s ...

Elsevier2014

Hybrid Transcriptional Regulators for the Screening of Target DNA Motifs in Organohalide-Respiring Bacteria

Marie Vingerhoets, Christof Holliger, Julien Maillard, Mathilde Stéphanie Willemin

The bioremediation of persistent organohalide molecules under anoxic conditions mostly relies on the bacterial process called organohalide respiration (OHR). Organohalide-respiring bacteria (OHRB) are phylogenetically diverse anaerobic bacteria that share ...

Frontiers Media SA2020

Hexachlorocyclohexane-degrading bacterial strains Sphingomonas paucimobilis B90A, UT26 and Sp+, having similar lin genes, represent three distinct species, Sphingobium indicum sp. nov., Sphingobium japonicum sp. nov. and Sphingobium francense sp. nov., and reclassification of [Sphingomonas] chungbukensis as Sphingobium chungbukense comb. nov

Christof Holliger, Mithlesh Kumar

Three strains of Sphingomonas paucimobilis, B90A, UT26 and Sp+, isolated from different geographical locations, were found to degrade hexachlorocyclohexane. Phylogenetic analysis based on 16S rRNA gene sequences indicated that these strains do not fall in ...

Society for General Microbiology2005

Correlations between environmental variables and bacterial community structures suggest Fe(III) and vinyl chloride reduction as antagonistic terminal electron-accepting processes

Christof Holliger, Pierre Rossi, Noam Shani

Natural attenuation of anaerobic aquifers contaminated with tetrachloroethene (PCE) often results in the accumulation of the intermediates cis-dichloroethene and vinyl chloride (VC) which are even more toxic than the parent compound. Reasons for this accum ...

Amer Chemical Soc2013

Assessment of bacterial and structural dynamics in aerobic granular sludge biofilms

Christof Holliger, David Gregory Weissbrodt, Yoan Rappaz

Aerobic granular sludge (AGS) is based on self-granulated flocs forming mobile biofilms with a gel-like consistence. Bacterial and structural dynamics from flocs to granules were followed in anaerobic-aerobic sequencing batch reactors (SBR) fed with synthe ...

Frontiers Media SA2013

Nitrogen Removal over Nitrite by Aeration Control in Aerobic Granular Sludge Sequencing Batch Reactors

Christof Holliger, Julien Maillard, Samuel Lochmatter

This study investigated the potential of aeration control for the achievement of N-removal over nitrite with aerobic granular sludge in sequencing batch reactors. N-removal over nitrite requires less COD, which is particularly interesting if COD is the lim ...

Mdpi Ag2014

Reductive dechlorination of tetrachloroethene by a stepwise catalysis of different organohalide respiring bacteria and reductive dehalogenases

Christof Holliger, Pierre Rossi, Julien Maillard, Emmanuelle Rohrbach, Katia Szynalski

The enrichment culture SL2 dechlorinating tetrachloroethene (PCE) to ethene with strong trichloroethene (TCE) accumulation prior to cis-1,2-dichloroethene (cis-DCE) formation was analyzed for the presence of organohalide respiring bacteria and reductive de ...

Springer Netherlands2011