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Concept

Ecosystem model

Publications associées (27)

The microbial genomics of glacier-fed streams: adaptations to an extreme ecosystem

Massimo Bourquin

Glacier-fed streams are the cold, ultra-oligotrophic, and unstable streams that are fed by glacial meltwater. Despite these extreme conditions, they harbour a diverse and abundant microbial diversity that develops into biofilms, covering the boulders and s ...

EPFL2024

The cost of adaptability: resource availability constrains functional stability under pulsed disturbances

Hannes Markus Peter

Global change exposes ecosystems to changes in the frequency, magnitude, and concomitancy of disturbances, which impact the composition and functioning of these systems. Here, we experimentally evaluate the effects of salinity disturbances and eutrophicati ...

Amer Soc Microbiology2024

At what spatial scale does natural selection operate? Using multiscale frameworks to calibrate the effects of environmental factors across landscape continuums

Annie Sandrine Guillaume

Patterns in nature arise from processes interacting across a continuum of spatial scales, where new relationships emerge at each level of investigation. These patterns are nested features encompassing fine-scale local patterns, such as topography and geolo ...

EPFL2024

Food web structure and energy flux dynamics, but not taxonomic richness, influence microbial ecosystem functions in a Sphagnum-dominated peatland

Alexandre Buttler, Vincent Eric Jules Jassey

Soil microbial communities are vital for multiple ecosystem processes and services. In particular, soil microbial food webs are key determinants of soil biodiversity, functioning and stability. Unclear, however, is how struc-tural features of food webs, su ...

ELSEVIER FRANCE-EDITIONS SCIENTIFIQUES MEDICALES ELSEVIER2023

Use of an unmanned aerial-aquatic vehicle for acoustic sensing in freshwater ecosystems

Mirko Kovac, Raphael Zufferey

Freshwater ecosystems are endangered, underfunded and understudied, making new methods such as passive acoustic monitoring (PAM) essential for improving the efficiency and effectiveness of data collection. However, many challenges are still to be addressed ...

Wiley2023

The Reef Environment Centralized InFormation System (RECIFS) : An integrated geo‐environmental database for coral reef research and conservation

Stéphane Joost, Oliver Michele Selmoni

Motivation: Host to intricate networks of marine species, coral reefs are among the most biologically diverse ecosystems on Earth. Over the past few decades, major degradations of coral reefs have been observed worldwide, which is largely attributed to the ...

2023

Glacier shrinkage will accelerate downstream decomposition of organic matter and alters microbiome structure and function

Tom Ian Battin, Hannes Markus Peter, Tyler Joe Kohler, Susheel Bhanu Busi, Grégoire Marie Octave Edouard Michoud, Massimo Bourquin, Leïla Ezzat, Jade Brandani, Paraskevi Pramateftaki, Matteo Tolosano, Vincent Henri De Staercke, Michail Styllas, Martina Andrea Schön, Nicola Deluigi, Stylianos Fodelianakis

The shrinking of glaciers is among the most iconic consequences of climate change. Despite this, the downstream consequences for ecosystem processes and related microbiome structure and function remain poorly understood. Here, using a space-for-time substi ...

Wiley2022

Mercury isotope evidence for Arctic summertime re-emission of mercury from the cryosphere

Jakob Boyd Pernov

During Arctic springtime, halogen radicals oxidize atmospheric elemental mercury (Hg0), which deposits to the cryosphere. This is followed by a summertime atmospheric Hg0 peak that is thought to resultmostly fromterrestrial Hg inputs to the ArcticOcean, fo ...

Nature Research2022

Improved framework to estimate travel time and derived distributions in hydrological control volumes

Mitra Asadollahi

Crossing properties of soil saturation, defined as the duration and excursion of soil saturation below and above certain thresholds, are key variables to ecosystem functioning and evolution by primarily influencing the plant and soil microbes physiological ...

EPFL2022

Perspectives in machine learning for wildlife conservation

Devis Tuia, Alexander Mathis, Mackenzie Mathis, Benjamin Alexander Kellenberger

Inexpensive and accessible sensors are accelerating data acquisition in animal ecology. These technologies hold great potential for large-scale ecological understanding, but are limited by current processing approaches which inefficiently distill data into ...

Nature Research2022

Both diversity and functional composition affect productivity and water use efficiency in experimental temperate grasslands

Charlotte Grossiord, Margaux Clara Lou Didion-Gency

Many experiments have shown that biodiversity promotes ecosystem functioning and stability and that this relationship varies with resource availability. However, we still have a poor understanding of the underlying physiological and ecological mechanisms d ...

WILEY2021

Warming of lowland Polish lakes under future climate change scenarios and consequences for ice cover and mixing dynamics

Sebastiano Piccolroaz

Study region: The study region comprises 25 lowland Polish lakes in the northern part of the country. The studied lakes provide domestic, industrial and agricultural water supply, and are major attractions for tourism, thus playing a significant role in th ...

2021

The architecture of benthic biofilms - Linking hydraulics to spatially structured processes

Anna Depetris

Biofilms are spatially structured ecosystems, characterized by patterns and architectural features determined by the interplay between endogenous and exogenous processes. As in many other structured ecosystems, the characterization of spatial interactions ...

EPFL2021

The Metabolic Regimes at the Scale of an Entire Stream Network Unveiled Through Sensor Data and Machine Learning

Tom Ian Battin, Enrico Bertuzzo, Pier Luigi Segatto

Streams and rivers form dense networks that drain the terrestrial landscape and are relevant for biodiversity dynamics, ecosystem functioning, and transport and transformation of carbon. Yet, resolving in both space and time gross primary production (GPP), ...

2021

21 000 birds in 4.5 h: efficient large‐scale seabird detection with machine learning

Devis Tuia, Benjamin Alexander Kellenberger

We address the task of automatically detecting and counting seabirds in unmanned aerial vehicle (UAV) imagery using deep convolutional neural networks (CNNs). Our study area, the coast of West Africa, harbours significant breeding colonies of terns and gul ...

2021

Modeling of Stream Metabolism from Reach-scale to the Scale of Entire River Networks

Pier Luigi Segatto

Streams are key components of the global carbon (C) cycle. The river network conceptualization moved from the pipelineâ idea, in which C is solely transported, to the active ecosystemâ concept, in which both terrestrial derived and autochthonous C ...

EPFL2021

Approaches to Test the Neurotoxicity of Environmental Contaminants in the Zebrafish Model: From Behavior to Molecular Mechanisms

Sarah-Katharina Könemann

The occurrence of neuroactive chemicals in the aquatic environment is on the rise and poses a potential threat to aquatic biota of currently unpredictable outcome. In particular, subtle changes caused by these chemicals to an organism's sensation or behavi ...

2021

Past and future impacts of climate change on swiss river temperature and discharge investigated with data analysis and numerical modelling

Adrien Michel

This thesis presents the first large-scale assessment of past, present and future impacts of climate change on river temperatures in Switzerland. Water temperature is a crucial factor influencing, among others, the health of aquatic ecosystems, the industr ...

EPFL2021

Modeling the coupled dynamics of stream metabolism and microbial biomass

Tom Ian Battin, Enrico Bertuzzo, Pier Luigi Segatto

Estimating and interpreting ecosystem metabolism remains an important challenge in stream ecology. Here, we propose a novel approach to model, estimate, and predict multiseasonal patterns of stream metabolism (gross primary production [GPP] and ecosystem r ...

American Society of Limnology and Oceanography2020

Generation and application of river network analogues for use in ecology and evolution

Andrea Rinaldo, Enrico Bertuzzo, Luca Carraro, Reinhard Furrer, Florian Altermatt

Several key processes in freshwater ecology are governed by the connectivity inherent to dendritic river networks. These have extensively been analyzed from a geomorphological and hydrological viewpoint, yet structures classically used in ecological modeli ...

2020