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Publications associées (24)

Benchmarking informatics approaches for virus discovery: caution is needed when combining in silico identification methods

Jaspreet Singh Saini

Understanding the ecological impacts of viruses on natural and engineered ecosystems relies on the accurate identification of viral sequences from community sequencing data. To maximize viral recovery from metagenomes, researchers frequently combine viral ...

Amer Soc Microbiology2024

Lake surface cooling drives littoral-pelagic exchange of dissolved gases

Alfred Johny Wüest, Damien Bouffard, Hugo Nicolás Ulloa Sánchez, Tomy Doda

The extent of littoral influence on lake gas dynamics remains debated in the aquatic science community due to the lack of direct quantification of lateral gas transport. The prevalent assumption of diffusive horizontal transport in gas budgets fails to exp ...

Amer Assoc Advancement Science2024

Excess labile carbon promotes diazotroph abundance in heat-stressed octocorals

Claudia Isabella Pogoreutz

Nitrogen limitation is the foundation of stable coral-algal symbioses. Diazotrophs, prokaryotes capable of fixing N-2 into ammonia, support the productivity of corals in oligotrophic waters, but could contribute to the destabilization of holobiont function ...

ROYAL SOC2023

What happens to biomass burning-emitted particles in the ocean? A laboratory experimental approach based on their tracers

Christos Panagiotopoulos

Wildfires, controlled burns, and biofuel combustion (biomass burning or BB) are major contributors to particulate matter in the atmosphere and thus have an impact on climate, human health, and ecosystems. Once emitted, the particulate matter derived from B ...

Elsevier2023

Coupled carbon and nitrogen cycling regulates the cnidarian–algal symbiosis

Anders Meibom, Stéphane Laurent Escrig, Nils Rädecker

Efficient nutrient recycling underpins the ecological success of cnidarian-algal symbioses in oligotrophic waters. In these symbioses, nitrogen limitation restricts the growth of algal endosymbionts in hospite and stimulates their release of photosynthates ...

Nature Research2023

Soil protist function varies with elevation in the Swiss Alps

Nicolas Jean Philippe Guex, Enrique Lara

Protists are abundant and play key trophic functions in soil. Documenting how their trophic contributions vary across large environmental gradients is essential to understand and predict how biogeochemical cycles will be impacted by global changes. Here, u ...

2022

Nutrient pollution enhances productivity and framework dissolution in algae- but not in coral-dominated reef communities

Nils Rädecker

Ecosystem services provided by coral reefs may be susceptible to the combined effects of benthic species shifts and anthropogenic nutrient pollution, but related field studies are scarce. We thus investigated in situ how dissolved inorganic nutrient enrich ...

2021

Hydrology controls the carbon mass balance of a mountain lake in the eastern European Alps

Tom Ian Battin

Lakes and streams in mountain regions are important contributors to carbon (C) fluxes. However, detailed carbon balances of the stream‐lake continuum are rare. Combining eddy covariance (EC) measurements of lake‐atmosphere net ecosystem CO2 exchange with m ...

American Society of Limnology and Oceanography2021

Viral Transfer and Inactivation through Zooplankton Trophic Interactions

Tamar Kohn, Virginie Bachmann, Xavier Fernandez Cassi, Margot Ninon Lauren Olive

Waterborne viruses are responsible for numerous diseases and are abundant in aquatic systems. Understanding the fate of viruses in natural systems has important implications for human health. This research quantifies the uptake of bacteriophage T4 and the ...

2020

Heterotrophy in the earliest gut: a single-cell view of heterotrophic carbon and nitrogen assimilation in sponge-microbe symbioses

Anders Meibom, Stéphane Laurent Escrig

Sponges are the oldest known extant animal-microbe symbiosis. These ubiquitous benthic animals play an important role in marine ecosystems in the cycling of dissolved organic matter (DOM), the largest source of organic matter on Earth. The conventional vie ...

NATURE PUBLISHING GROUP2020

Ammonium is the preferred source of nitrogen for planktonic foraminifer and their dinoflagellate symbionts

Anders Meibom, Emmanuelle Geslin, Charlotte Madeleine Nicole Lekieffre

The symbiotic planktonic foraminiferaOrbulina universainhabits open ocean oligotrophic ecosystems where dissolved nutrients are scarce and often limit biological productivity. It has previously been proposed thatO. universameets its nitrogen (N) requiremen ...

ROYAL SOC2020

Heterotrophic Foraminifera Capable of Inorganic Nitrogen Assimilation

Anders Meibom, Emmanuelle Geslin, Charlotte Madeleine Nicole Lekieffre

Nitrogen availability often limits biological productivity in marine systems, where inorganic nitrogen, such as ammonium is assimilated into the food web by bacteria and photoautotrophic eukaryotes. Recently, ammonium assimilation was observed in kleptopla ...

Frontiers Media SA2020

Delineating the Continuum of Dissolved Organic Matter in Temperate River Networks

Luis Gómez Gener

The origin and reactivity of dissolved organic matter (DOM) have received attention for decades due to the key role DOM plays in global carbon cycling and the ecology of aquatic systems. However, DOM dynamics in river networks remain unresolved, hampered b ...

2020

Patterns in Microbial Assemblages Exported From the Meltwater of Arctic and Sub-Arctic Glaciers

Tyler Joe Kohler

Meltwater streams connect the glacial cryosphere with downstream ecosystems. Dissolved and particulate matter exported from glacial ecosystems originates from contrasting supraglacial and subglacial environments, and exported microbial cells have the poten ...

Frontiers Media SA2020

Long-term impacts of nutrient control, climate change, and invasive clams on phytoplankton and cyanobacteria biomass in a large temperate river

Camille Roland Marie Minaudo

Recent studies suggest that climate change, with warmer water temperatures and lower and longer low flows, may enhance harmful planktic cyanobacterial growth in lakes and large rivers. Concomitantly, controlling nutrient loadings has proven effective in re ...

2020

Sub-cellular imaging shows reduced photosynthetic carbon and increased nitrogen assimilation by the non-native endosymbiontDurusdinium trenchiiin the model cnidarian Aiptasia

Anders Meibom

Hosting different symbiont species can affect inter-partner nutritional fluxes within the cnidarian-dinoflagellate symbiosis. Using nanoscale secondary ion mass spectrometry (NanoSIMS), we measured the spatial incorporation of photosynthetically fixed(13)C ...

WILEY2020

Sources, Transformation, and Fate of Dissolved Organic Matter in the Gravel Bar of a Prealpine Stream

Tom Ian Battin

Gravel bars (GBs) are hotspots of biogeochemical activity, likely impacting carbon dynamics instreams and rivers. However, it remains unclear how GBs process dissolved organic matter (DOM) receivedfrom stream water and groundwater. Here we investigate the ...

2020

Generalized size scaling of metabolic rates based on single-cell measurements with freshwater phytoplankton

Anders Meibom, Andrea Rinaldo, Amos Maritan, Stéphane Laurent Escrig, Andrea Giometto, Silvia Zaoli

Kleiber's law describes the scaling of metabolic rate with body size across several orders of magnitude in size and across taxa and is widely regarded as a fundamental law in biology. The physiological origins of Kleiber's law are still debated and general ...

National Academy of Sciences2019

Inorganic carbon and nitrogen assimilation in cellular compartments of a benthic kleptoplastic foraminifer

Anders Meibom, Emmanuelle Geslin, Charlotte Madeleine Nicole Lekieffre, Maria-Evangelia Giovani

Haynesina germanica, an ubiquitous benthic foraminifer in intertidal mudflats, has the remarkable ability to isolate, sequester, and use chloroplasts from microalgae. The photosynthetic functionality of these kleptoplasts has been demonstrated by measuring ...

Nature Research2018

Ozone and chlorine reactions with dissolved organic matter - Assessment of oxidant-reactive moieties by optical measurements and the electron donating capacities

Urs von Gunten

Oxidation processes are impacted by the type, concentration and reactivity of the dissolved organic matter (DOM). In this study, the reactions between various types of DOM (Suwannee River fulvic acid (SRFA), Nordic Reservoir NOM (NNOM) and Pony Lake fulvic ...

2018