Anne-Florence Raphaëlle BitbolI was trained in physics, and always had a strong interest in biology. I am broadly interested in understanding biological phenomena in a quantitative way, through physical concepts and mathematical and computational tools. I investigate the relative impacts of optimization and historical contingency in biological evolution, both at the scale of protein sequences and at the scale of microbial populations.Here is my research group website.Curriculum vitae Here is my complete CV. Professional experience:Since
Johan AuwerxEnseignement et PhD Doctorant·es actuel·les Wenyu Liu, Maria Boulougouri, Giacomo Vincenzo Giorgio Von Alvensleben A dirigé les thèses EPFL de Pénélope Andreux, Mitsunori Nomura, Evan Graehl Williams, Hongbo Zhang, Virginija Jovaisaite, Elena Katsyuba, Karim Laurent Gariani, Adrienne Joëlle Laurence Mottis, Hao Li, Peiling Luan, Alexis Bachmann, Mario Romani, Xiaoxu Li, Alessia De Masi, Amélia Lalou A co-dirigé les thèses EPFL de Serge Thanh Son Ducommun, Laura Lukjanenko, Joanna Ratajczak, Angélique Sato
Priscilla TurelliPositions
2005-présent: Chercheur, Ecole Polytechnique Fédérale de Lausanne, Laboratoire de virologie et génétique, Suisse.
2001-2004: Chercheur dans le laboratoire du Pr D. Trono, Département de Microbiologie, Ecole de Médecine de Genève, Suisse.
1997-2001: Etudiante Post-doctorante dans le laboratoire du Pr D. Trono, Département de Microbiologie, Ecole de Médecine de Genève, Suisse.
Honneurs et prix
2004: Bristol-Myers Squibb AIDS AWARD
1997-1999: Human Frontier Science Program fellowship
Education
June 1997:
PhD in cellular biology.
Final mark:jury congratulations.
Université de la Méditerranée, France.
June 1993:
Post-graduate diploma in cellular biology and microbiology.
INSERM U372, Marseille-Luminy, université de Provence, France.
June 1992:
Master in cellular biology Specialty: genetic.
Final mark: Best master student of this year.
Université de la Méditerranée, France.
June 1987:
Scientific baccalaureate, France.
Enseignement
2009-présent: co-directeur de thèses, Ecole Polytechnique Fédérale de Lausanne, Suisse
2002: Tuteur en virologie pour les étudiants de médecine, Ecole de Médecine de Genève, Suisse.
1996-1997: Tuteur en biologie moléculaire et biochimie, Université de la Méditerranée, Aix Marseille II Stewart ColeProfessor Stewart Cole is an international authority in bacterial molecular-genetics and genomics. He has made outstanding contributions in several fields including: bacterial anaerobic electron transport; genome analysis of retroviruses and papillomaviruses; antibiotic resistance mechanisms; and the molecular microbiology of toxigenic clostridia. His studies on isoniazid and multidrug resistance in Mycobacterium tuberculosis, together with his pioneering work on the pathogenicity, evolution and genomics of the tubercle and leprosy bacilli, have made him an undisputed leader in the field of mycobacterial research. The findings of his research are of direct relevance to public health and disease-control in both the developing world and the industrialised nations. He has published over 250 scientific papers and review articles, and holds many patents.
Rizlan Bernier-LatmaniHIGHER EDUCATION
Summer course: Advances in Genome Technology and Bioinformatics Course at the Marine Biology Laboratory in Woods Hole, MA. October 2005.
Ph.D. 2001 Civil and Environmental Engineering, Stanford University, CA
(Advisor, Jim Leckie, Biodegradation of uranyl (UO22 )-complexed citrate and implications for uranyl mobility in the subsurface)
M.S. 1995 Civil and Environmental Engineering, Stanford University, CA
B.S. 1993 Natural Resources with Honors, Cornell University, Ithaca, NY
PROFESSIONAL EMPLOYMENT
2013-present Associate professor with tenure, School of Architecture, Civil and Environmental Engineering, Swiss Federal Institute of Technology, Lausanne
2005-2013 Assistant professor tenure track, School of Architecture, Civil and Environmental Engineering, Swiss Federal Institute of Technology, Lausanne
2001-2005 Post-Graduate Researcher, Scripps Institution of Oceanography, La Jolla, CA (PI: Brad Tebo)
1995-2001 Graduate Research Assistant, Stanford University (Advisor: Jim Leckie)
RESEARCH INTERESTS
Gemicrobiology, metal-bacteria interactions, biological reduction and oxidation of metals, biological nanoparticle formation; Characterization of microbial communities in terrestrial environments; Using genomic, microscopic and spectroscopic tools to understand metal transformations by microorganisms.
ACADEMIC HONORS
Rotary Foundation University Professor grant, 2004.
Swiss National Science Foundation Post-doctoral Fellowship, 2001.
Leon B. Reynolds Memorial Scholarship in the School of Engineering at Stanford University, 1995-96.
Graduated with Honors from Cornell University, 1993.
BIBLIOMETRY
http://www.researcherid.com/rid/E-4398-2011
ResearcherID: E-4398-2011 Christian IseliExpertise
BioinformatiqueComputer engineering
Enseignement et PhD Cours Bioinformatic Analysis of RNA-sequencing (Fall) BIO-693(a) Due to its success, this course will take place from 1st to 5th September 2025 in room AAC 0 20.It introduces the workflows and techniques that are used for the analysis of bulk and single-cell RNA-seq data. It empowers students to understand and analyze their own data. Bioinformatic Analysis of RNA-sequencing (Spring) BIO-693(b) Methods: omics
Bastien MangeatEnseignement et PhD Cours Methods: omics in biomedical research BIOENG-519 Les méthodologies à haut débit, appelées "Omiques", permettent de caractériser la complexité et la dynamique de tout système biologique. Ce cours fournira une description générale des méthodes liées au domaine des "Omiques", suivie de rotations pratiques dans les plateformes participantes.
Aleksandra RadenovicEnseignement et PhD Doctorant·es actuel·les Helena Miljkovic, Akhil Sai Naidu, Karl Rufus Pang Yeo, Wei Guo, Eveline Simone Mayner, Nianduo Cai, Marianna Mitsioni A dirigé les thèses EPFL de Paolo Annibale, Camille Alice Raillon, Fabrizia Dutto, Arun Shivanandan, Metin Kayci, Jiandong Feng, Roman Bulushev, Michael Graf, Adrien Charles Descloux, Sebastian James Davis, Martina Lihter, Evgenii Glushkov, Vytautas Navikas, Arielle Louise Planchette, Michal Daniel Macha, Mukeshchand Thakur, Nathan Ronceray, Kha
Vassily HatzimanikatisEnseignement et PhD Doctorant·es actuel·les Denis Alain Henri Lucien Joly, Luca Milazzo, David Liaskos, Konrad Lagoda, Omar Keshk, Yigit Sibal, Ioannis Tzegiannakis A dirigé les thèses EPFL de Keng Cher Soh, Julien Racle, Noushin Hadadi, Stefano Andreozzi, Stepan Tymoshenko, Meriç Ataman, Joana Raquel Pinto Vieira, Tiziano Dallavilla, Yves Berset, Anush Chiappino-Pepe, Milenko Tokic, Tuure Eelis Hameri, Jasmin Maria Hafner, Homa Mohammadi Peyhani, Daniel Robert Weilandt, Zhaleh Hosseini, Sofia Tsouka, Mar
Jean-Paul Richard KneibEnseignement et PhD Doctorant·es actuel·les Oliver Pineda Suarez, Robert Daniel Kincaid, Ethan Daniel Tregidga, Belén Yu Irureta-Goyena Chang, Elisabeth Andréa Cécile Rachith, Shengyu He, Aurélien Thomas Mathieu Verdier, Timour Jestin A dirigé les thèses EPFL de Markus Rexroth, Luzius Gregor Kronig, Christoph Ernst René Schäfer, Vasileios Angelopoulos, Michaël Juillard, Amélie Tamone, Andrei Variu, Yoan Rappaz, Anne-Marlene Rüede, Jiaxi Yu, Daniel Felipe Forero Sanchez, Beauchesne Benjamin Emmanuel Nicola
Dario FloreanoProf. Dario Floreano is director of the Laboratory of Intelligent Systems at the Swiss Federal Institute of Technology Lausanne (EPFL). Since 2010, he is the founding director of the Swiss National Center of Competence in Robotics, a research program that brings together more than 20 labs across Switzerland. Prof. Floreano holds an M.A. in Vision, an M.S. in Neural Computation, and a PhD in Robotics. He has held research positions at Sony Computer Science Laboratory, at Caltech/JPL, and at Harvard University. His main research interests are Robotics and A.I. at the convergence of biology and engineering. Prof. Floreano made pioneering contributions to the fields of evolutionary robotics, aerial robotics, and soft robotics. He served in numerous advisory boards and committees, including the Future and Emerging Technologies division of the European Commission, the World Economic Forum Agenda Council, the International Society of Artificial Life, the International Neural Network Society, and in the editorial committee of several scientific journals. In addition, he helped spinning off two drone companies (senseFly.com and Flyability.com) and a non-for-profit portal on robotics and A.I. (RoboHub.org). Books
Manuale sulle Reti Neurali, il Mulino (in Italian), 1996 (first edition), 2006 (second edition)Evolutionary Robotics, MIT Press, 2000
Bio-Inspired Artificial Intelligence, MIT Press, 2008
Flying Insects and Robots, Springer Verlag, 2010
Suliana ManleyExpertise
Super-resolution fluorescence microscopy, single molecule imaging in cells, cellular biophysics, bacterial cell cycle
Enseignement et PhD Doctorant·es actuel·les Emine Berna Durmus, Santiago Nicolás Rodriguez Alvarez, Laila Elfeky, Alara Kiris, Hale-Seda Ivo Radoykova A dirigé les thèses EPFL de Julia Gunzenhäuser, Aleksandr Benke, Lina Carlini, Andrea Callegari, Aster Louis K Vanhecke, Anna Archetti, Dora Mahecic, Timo Henry René Rey, Julius Winter, Chen Zhang, Jenny Sülzle, Sheda Ben Nejma Cou
Didier TronoAprès des études de médecine à l’Université de Genève et une formation clinique en pathologie, médecine interne et maladies infectieuses à Genève et au Massachusetts General Hospital de Boston, Didier Trono s’engage dans une carrière scientifique au Whitehead Institute du MIT. En 1990, il est recruté par le Salk Institute de San Diego pour lancer un centre de recherche sur le SIDA. Il rentre en Europe sept ans plus tard, avant de prendre en 2004 les rênes de la toute nouvelle faculté des Sciences de la Vie de l’EPFL, dont il orchestre le développement et qu’il dirige jusqu’en 2012. Il participe aujourd’hui activement à la coordination des efforts de la Suisse en vue de l’intégration des nouvelles technologies dans le domaine de la médecine de précision et de la santé personnalisée.
Giovanna AmbrosiniCurrent Position Senior Scientist, School of Life Sciences, Bioinformatics Competence Center, école Polythechnique Fédérale de Lausanne, Lausanne.Senior bioinformatician and software engineer with proven experience working in higher education institutions. Solid experience in scientific computing and web design. Proficient in physics and computational genomics, with a focus on high-throughput genomic sequencing data analysis (ChIP-seq, ATAC-seq, RNA-seq, scRNA-seq, and exome sequencing) and other types of
