Romain GuietExpertise
Development of BioImage Analysis workflows and algorithms to extract quantitative data from microscopy images.BioSample Preparation : in vitro cell, organoid, time-lapse, fixation, staining strategies, actin, mitochondria, fluorescent protein expressionBioImage Acquisition : Widefield, Confocal, Whole Slide Imaging, Super-resolution (SIM, STORM, STED), FRET, FRAP, FLIMBioImage Analysis: Colocalisation analysis, Deconvolution, Time-lapse , Whole Slide ImagingTools & Software: ImageJ/Fiji, QuPath, i
Michaël UnserExpertise
Image Processing Medical Imaging Biological Imaging Wavelets Splines Multiresolution
Enseignement et PhD Doctorant·es actuel·les Youssef Haouchat, Vincent Patrick Lawrence Guillemet, Bassam El Rawas, Stanislas Ducotterd, Mehrsa Pourya, Zhiyuan Hu A dirigé les thèses EPFL de Stefan Horbelt, Jan Kybic, Maria Arrate Munoz Barrutia, Manuela Feilner, Slavica Jonic, Mathews Jacob, Michael Liebling, Michael Sühling, Muthuvel Arigovindan, François Aguet, Cédric Vonesch, Ildar Khalidov, Sathish Ramani, F
Pierre MagistrettiPierre J. Magistretti is an internationally-recognized neuroscientist who has made significant contributions in the field of brain energy metabolism. His group has discovered some of the cellular and molecular mechanisms that underlie the coupling between neuronal activity and energy consumption by the brain.
This work has considerable ramifications for the understanding of the origin of the signals detected with the current functional brain imaging techniques used in neurological and psychiatric research (see for example Magistretti et al, Science, 283: 496 497, 1999). He is the author of over 100 articles published in peer-reviewed journals.
He has given over 80 invited lectures at international meetings or at universities in Europe and North America, including the 2000 Talairach Lecture at the Functional Mapping of the Human Brain Conference. In November 2000 he has been a Mc Donnel Visiting Scholar at Washington University School of Medicine.
Pierre J. Magistretti is the President-Elect (2002 2004) of the Federation of European Neuroscience Societies (FENS) which has a membership of over 15000 European neuroscientists. He has been first president of the Swiss Society for Neuroscience (1997-1999) and the first Chairman of the Department of Neurosciences of the University of Lausanne (1996 1998).
Pierre J. Magistretti is Professor of Physiology (since 1988) at the University of Lausanne Medical School. He has been Vice-Dean of the University of Lausanne Medical School from 1996 to 2000. Pierre Magistretti, is Director of the Brain Mind Institute at EPFL and Director of the Center for Psychiatric Neuroscience of the University of Lausanne and CHUV. He is also Director of the NCCR SYNAPSY "the synaptic bases of mental diseases".
POSITIONS AND HONORS
MAIN POSITION HELD
1988-2004 Professor of Physiology, University of Lausanne Medical School
1996-2000 Vice-Dean for Preclinical Departments, University of Lausanne Medical School
2001-2004 Chairman, Department of Physiology, University of Lausanne Medical School
2004-present Professor and Director, Center for Psychiatric Neuroscience, Department of Psychiatry, University of Lausanne Medical School and Hospitals (UNIL-CHUV) (Joint appointment with EPFL)
2005-2008 Professor and Co-Director, Brain Mind Institute, Federal Institute of Technology (EPFL), Lausanne (Joint appointment with UNIL-CHUV)
2007-present Chairman of the Scientific Advisory Board of Centre dImagerie Biomédicale (CIBM), an Imaging Consortium of the Universities, University Hospitals of Lausanne and Geneva and of Ecole Polytechnique Fédérale de Lausanne
2008-present Professor and Director, Brain Mind Institute, Federal Institute of Technology (EPFL), Lausanne Joint appointment with UNIL-CHUV)
2010-present Director, National Center for Competence in Research (NCCR)
The synaptic bases of mental diseases of the Swiss National Science Foundation
2010-present Secretary General, International Brain Research Organization (IBRO)
MAIN HONORS AND AWARDS
1997 Recipient of the Theodore-Ott Prize of the Swiss Academy of Medical Sciences
2001 Elected Member of Academia Europaea
2001 Elected Member of the Swiss Academy of Medical Sciences, ad personam
2002 Recipient of the Emil Kraepelin Guest Professorship, Max Planck Institute für Psychiatry, Münich
2006 Elected Professor at Collège de France, Paris, International Chair 2007-2008
2009 Goethe Award for Psychoanalytic Scholarship, Canadian Psychological Association
2011 Camillo Golgi Medal Award, Golgi Fondation
2011 Elected Member of the American College of NeuroPsychopharmacology (ACNP)
Henning Paul-Julius StahlbergPositions:
Since 2020 Prof. Physics, IPHYS, SB, EPFL, Switzerland 2009 – 2021 Prof. Structural Biology, Biozentrum, University Basel, Switzerland
2009 – 2010 Adj. Assoc. Prof. Molecular & Cellular Biology, UC Davis, CA, USA
2007 – 2009 Assoc. Prof. Molecular & Cellular Biology, UC Davis, CA, USA
2003 – 2007 Assist. Prof. Molecular & Cellular Biology, UC Davis, CA, USA
Education: 2002 Habilitation, Biozentrum, University Basel, Switzerland 1997 – 2003 Postdoctoral Fellow, Biozentrum, University Basel, Switzerland 1992 – 1997 PhD Student, EPFL, Lausanne, Switzerland 1990 – 1991 Diploma Thesis in Solid State Physics, TU Berlin, Germany 1987 – 1993 Study of Physics, TU Berlin, Germany Selected Awards & Honors: 2009 W.M.Keck Award 2004 CAREER award, NSF, USA 2002 Habilitation, University Basel, Switzerland Selected Memberships: 2008 – 2013 Chancellor’s Fellow Award, UC Davis, CA, USA 2004 – 2009 Faculty of 1000 Since 1992 Swiss Society for Optics and Microscopy (SSOM)
Arne SeitzEnseignement et PhD Cours Advanced Microscopy for Life Science BIO-659 For further information, please get in contact with the instructor or have a look on the following web-site: http://biop.epfl.ch/ Bioimage informatics BIO-410 Le cours fournit une complète revue des méthodes, algorithmes et des outils logiciels utilisés en analyse d'images biologiques. Il expose les concepts fondamentaux et les solutions informatiques permettant d'extraire des informations quantitatives à Claudio BruschiniClaudio Bruschini holds an MSc in high energy physics from the University of Genova and a PhD in Applied Sciences from the Vrije Universiteit Brussel (VUB). He started his career with INFN (Italy, 1993), in the WA92 CERN collaboration (particle physics), and then moved to CERN as a Fellow in the European GP-MIMD2 project, attached to the NA48 collaboration (particle physics, parallel programming, 1994-1995). He then started his close collaboration with EPFL, first in the DeTeC (Demining Technology Center) project (sensors for landmine detection/humanitarian demining, 1996-1997). After DeTeC's end, he started the first of a series of fruitful collaborations with the Vrije Universiteit Brussel (VUB) on humanitarian demining related R&D (1998). This was followed by the EUDEM survey project (The European Union in Humanitarian Demining, 1998), the EUDEM2 three year EC sponsored support measure (www.eudem.info, 2001-2004), and the DELVE support action (www.delve.vub.ac.be, 2007). In parallel he started working within the EPFL's AQUA group (Advanced Quantum Architectures, Edoardo Charbon), on topics as diverse as ultrasonic sensors for in-air application, optical 3D and high speed 2D sensing, sensor networks, or tracking/motion capture systems, in particular for the preparation of research projects. This culminated in the European MEGAFRAME (www.megaframe.eu, FP6, 2006-2010, SPAD arrays and related in-pixel time stamping electronics in deep submicron CMOS technology) and SPADnet (www.spadnet.eu, FP7, 2010-2014, networked SPAD arrays for Positron Emission Tomography) projects, coordinated by EPFL-AQUA. As from 2009 he also worked with Dario Floreano on the management of the CURVACE Curved Artificial Compound Eyes FP7 project (www.curvace.org), coordinated by EPFL-LIS. He was also active with CHUV (Lausanne University Hospital) within EndoTOFPET-US (endoscopic PET) as well as on a CTI project devoted to the development of a new hand-held standalone tool for tracer-guided medical procedures. In 2014 he had also the pleasure of joining the EPFL ICLAB of Christian Enz during its ramp-up phase, collaborating on device related topics (SNF GigaRadMOST) and biomedical R&D (NanoTera WiseSkin). Claudio is now fully with EPFL’s Advanced Quantum Architecture (AQUA). He has also been active as independent scientific consultant, under the label CBR Scientific Consulting, on the preparation of (European) R&D project proposals and the execution of individual studies, and worked in 2006 for a local start-up as operations manager and R&D advisor.... but this is another story. An unauthorized early biography is available at http://lami.epfl.ch/team/claudiob/... John BotsisJohn (Ioannis) Botsis obtained his diplôme in civil engineering at the University of Patras, Greece in 1979. He continued his education at Case Institute of Technology in Cleveland Ohio/USA, where he received his MS and Ph.D. in 1984. After two years at the research center for national defense in Athens he was nominated assistant professor at the University of Illinois in Chicago, associate in 1991 and full professor in 1995. In 1996, he was nominated professor of solids and structural mechanics at the EPFL. At EPFL he teaches mechanics of structures and mechanics of continuous media´ at the bachelors level and Fracture mechanics at the masters and doctoral levels. His research covers the mechanics of solids and structures, fracture mechanics and micromechanics of polymers, metals and their composites as well as biomechanics. He is also actively involved in full-filed optical methods for surface strain measurements as well as internal strain measurements using fiber Bragg grating sensors, aimed at characterizing micromechanics of fracture, residual strains and strain distribution in composite laminates for structural monitoring. Funding for his research comes from the Swiss National Science Foundation, State Secretariat for Education and Research and Swiss industry. He retired on February 28, 2020.
Daniel SageExpertise
Publications
Enseignement et PhD A co-dirigé les thèses EPFL de Daniel Andreas Schmitter, Anaïs Badoual, Laurène Donati Cours Bioimage informatics BIO-410 Le cours fournit une complète revue des méthodes, algorithmes et des outils logiciels utilisés en analyse d'images biologiques. Il expose les concepts fondamentaux et les solutions informatiques permettant d'extraire des informations quantitatives à partir d'images multidimensionnelles. Fundamentals of Image Analysis EE
Sahand Jamal RahiExpertise
- Biophysics- Statistical mechanics- Systems biology- Computational biology- Genetics
Enseignement et PhD Doctorant·es actuel·les Alisa Gross, Matthieu Schmidt, Marco Labagnara, Lorenzo Scutteri, Haozong Zeng A dirigé les thèses EPFL de Ahmad Sadeghi, Mahsa Barzegarkeshteli, Vojislav Gligorovski, Roxane Oesterle Cours Biophysics : physics of biological systems PHYS-302 Comprendre et utiliser la génétique des populations, la dynamique des populations, la théorie des réseaux et la
Demetri PsaltisEnseignement et PhD Doctorant·es actuel·les Victoria Fay, Colin Nikhil Christian A dirigé les thèses EPFL de Wuzhou Song, Alexandre Goy, Julien Cuennet, Ioannis Papadopoulos, Xin Yang, Grégoire Pierre Jean Laporte, Thomas Jean Victor Marie Lanvin, Seyyed Mohammad Hosseini Hashemi, Nicolino Stasio, Morteza Hasani Shoreh, Marilisa Romito, Pooria Hadikhani, Eirini Kakkava, Joowon Lim, Giulia Panusa, Ahmed Bassam Sayed Ayoub Mohamed Ayoub, Amirhossein Saba, Niyazi Ulas Dinç A co-dirigé les thèses EPFL de Ugur
