Giovanna AmbrosiniCurrent Position Senior Scientist, School of Life Sciences, Bioinformatics Competence Center, école Polythechnique Fédérale de Lausanne, Lausanne.Senior bioinformatician and software engineer with proven experience working in higher education institutions. Solid experience in scientific computing and web design. Proficient in physics and computational genomics, with a focus on high-throughput genomic sequencing data analysis (ChIP-seq, ATAC-seq, RNA-seq, scRNA-seq, and exome sequencing) and other types of
Nicolas Jean Philippe GuexEnseignement et PhD Cours Bioinformatic Analysis of RNA-sequencing (Fall) BIO-693(a) Due to its success, this course will take place from 1st to 5th September 2025 in room AAC 0 20.It introduces the workflows and techniques that are used for the analysis of bulk and single-cell RNA-seq data. It empowers students to understand and analyze their own data. Bioinformatic Analysis of RNA-sequencing (Spring) BIO-693(b) Methods: omics in biomedical research BIOENG-519
Anne-Florence Raphaëlle BitbolI was trained in physics, and always had a strong interest in biology. I am broadly interested in understanding biological phenomena in a quantitative way, through physical concepts and mathematical and computational tools. I investigate the relative impacts of optimization and historical contingency in biological evolution, both at the scale of protein sequences and at the scale of microbial populations.Here is my research group website.Curriculum vitae Here is my complete CV. Professional experience:Since
Christian IseliExpertise
BioinformatiqueComputer engineering
Enseignement et PhD Cours Bioinformatic Analysis of RNA-sequencing (Fall) BIO-693(a) Due to its success, this course will take place from 1st to 5th September 2025 in room AAC 0 20.It introduces the workflows and techniques that are used for the analysis of bulk and single-cell RNA-seq data. It empowers students to understand and analyze their own data. Bioinformatic Analysis of RNA-sequencing (Spring) BIO-693(b) Methods: omics
Allison Marie BurnsEnseignement et PhD Cours Bioinformatic Analysis of RNA-sequencing (Fall) BIO-693(a) Due to its success, this course will take place from 1st to 5th September 2025 in room AAC 0 20.It introduces the workflows and techniques that are used for the analysis of bulk and single-cell RNA-seq data. It empowers students to understand and analyze their own data. Bioinformatic Analysis of RNA-sequencing (Spring) BIO-693(b)
Linda MarchandEnseignement et PhD Cours Applied statistics MATH-516 Le cours présente un aperçu des défis quotidiens en statistique appliquée à travers des problèmes réels. Les étudiants vont utiliser les méthodes statistiques basiques et modernes, pour proposer des solutions reproductibles aux problèmes présentés. Bioinformatic Analysis of RNA-sequencing (Fall) BIO-693(a) Due to its success, this course will take place from 1st to 5th September 2025 in room AAC 0 20.It introduces the work
Hubert GiraultEducation: 1979 - Engineering diploma from Grenoble Institute of Technology. FRANCE. 1982 - PhD- Department of Chemistry, University of Southampton. Thesis entitled : Interfacial studies using drop image processing techniques. Positions : 1982 - 1984 SERC Research Fellow. University of Southampton. 1984 - 1985 CNRS Research Fellow. University of Southampton. 1985 - 1992 Lecturer in Physical Chemistry, University of Edinburgh. 1992 - Professor of Physical Chemistry, Ecole Polytechnique Fédérale de Lausanne. 2011 - 2014 Dean of Bachelor and Master studies Hubert Girault is the author of 2 textbooks, the co-author of about 600 scientific publications with more than 20'000 citations and the co-inventor of more than 15 patents. During his academic career, he has supervised 70 PhD students. 30 alumni of his laboratory are now Professors. Honours: Faraday medal 2006, Royal Society of Chemistry, Fellow of the International Society of Electrochemistry 2007, Reilley Award 2015. Fellow of the Electrochemical Society (USA), Shikata International medal, Polarography Society of Japan. Associate editor of Chemical Science
Pierre MagistrettiPierre J. Magistretti is an internationally-recognized neuroscientist who has made significant contributions in the field of brain energy metabolism. His group has discovered some of the cellular and molecular mechanisms that underlie the coupling between neuronal activity and energy consumption by the brain.
This work has considerable ramifications for the understanding of the origin of the signals detected with the current functional brain imaging techniques used in neurological and psychiatric research (see for example Magistretti et al, Science, 283: 496 497, 1999). He is the author of over 100 articles published in peer-reviewed journals.
He has given over 80 invited lectures at international meetings or at universities in Europe and North America, including the 2000 Talairach Lecture at the Functional Mapping of the Human Brain Conference. In November 2000 he has been a Mc Donnel Visiting Scholar at Washington University School of Medicine.
Pierre J. Magistretti is the President-Elect (2002 2004) of the Federation of European Neuroscience Societies (FENS) which has a membership of over 15000 European neuroscientists. He has been first president of the Swiss Society for Neuroscience (1997-1999) and the first Chairman of the Department of Neurosciences of the University of Lausanne (1996 1998).
Pierre J. Magistretti is Professor of Physiology (since 1988) at the University of Lausanne Medical School. He has been Vice-Dean of the University of Lausanne Medical School from 1996 to 2000. Pierre Magistretti, is Director of the Brain Mind Institute at EPFL and Director of the Center for Psychiatric Neuroscience of the University of Lausanne and CHUV. He is also Director of the NCCR SYNAPSY "the synaptic bases of mental diseases".
POSITIONS AND HONORS
MAIN POSITION HELD
1988-2004 Professor of Physiology, University of Lausanne Medical School
1996-2000 Vice-Dean for Preclinical Departments, University of Lausanne Medical School
2001-2004 Chairman, Department of Physiology, University of Lausanne Medical School
2004-present Professor and Director, Center for Psychiatric Neuroscience, Department of Psychiatry, University of Lausanne Medical School and Hospitals (UNIL-CHUV) (Joint appointment with EPFL)
2005-2008 Professor and Co-Director, Brain Mind Institute, Federal Institute of Technology (EPFL), Lausanne (Joint appointment with UNIL-CHUV)
2007-present Chairman of the Scientific Advisory Board of Centre dImagerie Biomédicale (CIBM), an Imaging Consortium of the Universities, University Hospitals of Lausanne and Geneva and of Ecole Polytechnique Fédérale de Lausanne
2008-present Professor and Director, Brain Mind Institute, Federal Institute of Technology (EPFL), Lausanne Joint appointment with UNIL-CHUV)
2010-present Director, National Center for Competence in Research (NCCR)
The synaptic bases of mental diseases of the Swiss National Science Foundation
2010-present Secretary General, International Brain Research Organization (IBRO)
MAIN HONORS AND AWARDS
1997 Recipient of the Theodore-Ott Prize of the Swiss Academy of Medical Sciences
2001 Elected Member of Academia Europaea
2001 Elected Member of the Swiss Academy of Medical Sciences, ad personam
2002 Recipient of the Emil Kraepelin Guest Professorship, Max Planck Institute für Psychiatry, Münich
2006 Elected Professor at Collège de France, Paris, International Chair 2007-2008
2009 Goethe Award for Psychoanalytic Scholarship, Canadian Psychological Association
2011 Camillo Golgi Medal Award, Golgi Fondation
2011 Elected Member of the American College of NeuroPsychopharmacology (ACNP)
Stewart ColeProfessor Stewart Cole is an international authority in bacterial molecular-genetics and genomics. He has made outstanding contributions in several fields including: bacterial anaerobic electron transport; genome analysis of retroviruses and papillomaviruses; antibiotic resistance mechanisms; and the molecular microbiology of toxigenic clostridia. His studies on isoniazid and multidrug resistance in Mycobacterium tuberculosis, together with his pioneering work on the pathogenicity, evolution and genomics of the tubercle and leprosy bacilli, have made him an undisputed leader in the field of mycobacterial research. The findings of his research are of direct relevance to public health and disease-control in both the developing world and the industrialised nations. He has published over 250 scientific papers and review articles, and holds many patents.
Stéphane JoostPublications Publications- List of publications
Enseignement et PhD Doctorant·es actuel·les Marco André Vieira Ruas, Manon Laetitia Pribille, Martine Valérie Besse A dirigé les thèses EPFL de Estelle Rochat, Solange Catherine Gaillard, Oliver Michele Selmoni, Anaïs Ladoy, Annie Sandrine Guillaume A co-dirigé les thèses EPFL de Sylvie Stucki, Kevin Leempoel, Martí Bosch Padrós, Andrea Salmi Cours Border Forensics PENS-318 Le cours présentera aux étudiants différentes formes de violence liée
Benoît Jean Dominique FerrariBiologiste et biochimiste de formation, Benoît J.D. Ferrari a obtenu son diplôme de doctorat en Ecotoxicologie à lUniversité de Lorraine (Metz, France) en 2000 en travaillant sur le développement dune approche dévaluation du danger écotoxique des déchets solides utilisant une batterie de bioessais dans le cadre dun projet interdisciplinaire suivi par lAgence de lEnvironnement et de la Maîtrise de lEnergie (ADEME). Après avoir passé presque 7 années à Irstea (anciennement Cemagref) à Lyon en France (périodes 2000-2002 et 2008-2013) et avoir occupé un poste de Maitre-assistant à lInstitut F.A. Forel à Genève (2002-2008), il a acquis au travers des projets franco-suisses et européens quil a (co-)pilotés une expérience forte dans le domaine de lécotoxicologie et dans les approches pluridisciplinaires. En Octobre 2013, il rejoint le Centre Suisse dEcotoxicologie Appliquée (Centre Ecotox Eawag/EPFL) en tant que responsable du groupe Sol et Sédiment. Sintéressant à létude de lécodynamique des contaminants et leurs effets sur lécophysiologie des organismes, ses compétences et ses thématiques de recherche appliquée couvrent aujourdhui :
Le développement dindicateurs écotoxicologiques dexposition et deffets pour évaluer le stresse chimique
Lintégration des indicateurs écotoxicologiques dans des approches de laboratoire et de terrain pour le diagnostic de la qualité des écosystèmes
Le développement de bioessais adaptés pour le biomonitoring actif
Le transfert de compétence vers la sphère opérationnelle (formation).
Régis Lionel VivienExpertise
Systématique classique (oligochètes aquatiques)Ecologie aquatiqueSystématique moléculaireEcotoxicologie des sédiments
Mission
Réalisation de projets de recherche dans les domaines de la systématique, écologie et écotoxicologie:- Application, validation et développement de méthodes biologiques basées sur l'étude des communautés d'oligochètes pour l'évaluation de la qualité des sédiments des cours d'eau et des lacs (sédiment fins/sableux ; sédiments grossiers/milieu hyporhéique)- Développement d'ind
Christian HeinisEnseignement et PhD Doctorant·es actuel·les Thomas Julien Denis Emel, Alessandro Scapozza, Nathan Moïse De Sadeleer, Florian Handel, Hugo André Clerc, Frédéric Brantschen, Grégoire Menoud, Ines Michrafy, Jonathan Schmitt, Laura Elena Massaad A dirigé les thèses EPFL de Jeremy Touati, Shiyu Chen, Sophie Venet-Bonnot, Lisa Pollaro, Inmaculada Rentero Rebollo, Philippe Diderich, Charlotte Urech-Varenne, Silvia Bellotto, Davide Bertoldo, Alessandro Zorzi, Camille Villequey, Jonas Alfred Karl Wilbs, Grigory Ka
Paul Joseph DysonPaul Dyson rejoignit l’EPFL en 2002 à la tête du Laboratoire de chimie organométallique et médicinale de l’Institut des sciences et ingénierie chimiques, dont il en assuma ensuite la direction entre 2008 et 2016.
Le prof. Dyson a été récompensé par de nombreux prix dont le Prix Werner de la Société Suisse de Chimie en 2004, le Prix pour les réalisations exceptionnelles en chimie bio organométallique en 2010, la Médaille du Centenaire de la naissance de Luigi Sacconi (2011) de la Société Italienne de Chimie, le Prix de Chimie bio-inorganique de la Royal Society of Chemistry en 2015, le Prix européen pour une chimie durable de la Société Européenne de Chimie en 2018 et le Prix pour la chimie verte de la Royal Society of Chemistry en 2020.
Le prof. Dyson est également mentionné dans la liste établie par Clarivate des chercheurs les plus cités (Clarivate Highly Cited Researcher), avec un H-index >110 (Web of Science et Google Scholar). Paul Dyson a été élu membre de la Royal Société de Chimie en 2010, membre de l’Académie Européenne des Sciences en 2019 et membre à vie de l’Association Américaine pour l’Avancement de la Science en 2020. Au cours des dernières années il s’est vu décerner le titre de Professeurs Hôte par l’Université de Bourgogne, l’Université de Pierre et Marie Curie, l’Université de Vienne, l’Université de Rome Tor Vergara, l'Ecole Nationale Supérieure de chimie de Paris (Chimie ParisTech) et par l’Université de Shangai Jiao Tong.
De 2016 à 2021 il était membre du conseil de la recherche de la division de mathématique, sciences naturelles et de l’ingénieur du Fonds National Suisse. En 2021, il a été nommé doyen de la Faculté des Sciences de Base.
David Atienza AlonsoDavid Atienza Alonso is an associate professor of EE and director of the Embedded Systems Laboratory (ESL) at EPFL, Switzerland. He received his MSc and PhD degrees in computer science and engineering from UCM, Spain, and IMEC, Belgium, in 2001 and 2005, respectively. His research interests include system-level design methodologies for multi-processor system-on-chip (MPSoC) servers and edge AI architectures. Dr. Atienza has co-authored more than 350 papers, one book, and 12 patents in these previous areas. He has also received several recognitions and award, among them, the ICCAD 10-Year Retrospective Most Influential Paper Award in 2020, Design Automation Conference (DAC) Under-40 Innovators Award in 2018, the IEEE TCCPS Mid-Career Award in 2018, an ERC Consolidator Grant in 2016, the IEEE CEDA Early Career Award in 2013, the ACM SIGDA Outstanding New Faculty Award in 2012, and a Faculty Award from Sun Labs at Oracle in 2011. He has also earned two best paper awards at the VLSI-SoC 2009 and CST-HPCS 2012 conference, and five best paper award nominations at the DAC 2013, DATE 2013, WEHA-HPCS 2010, ICCAD 2006, and DAC 2004 conferences. He serves or has served as associate editor of IEEE Trans. on Computers (TC), IEEE Design & Test of Computers (D&T), IEEE Trans. on CAD (T-CAD), IEEE Transactions on Sustainable Computing (T-SUSC), and Elsevier Integration. He was the Technical Program Chair of DATE 2015 and General Chair of DATE 2017. He served as President of IEEE CEDA in the period 2018-2019 and was GOLD member of the Board of Governors of IEEE CASS from 2010 to 2012. He is a Distinguished Member of ACM and an IEEE Fellow.
Arne SeitzEnseignement et PhD Cours Advanced Microscopy for Life Science BIO-659 For further information, please get in contact with the instructor or have a look on the following web-site: http://biop.epfl.ch/ Bioimage informatics BIO-410 Le cours fournit une complète revue des méthodes, algorithmes et des outils logiciels utilisés en analyse d'images biologiques. Il expose les concepts fondamentaux et les solutions informatiques permettant d'extraire des informations quantitatives à 