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Catégorie

Statistical graphics

Publications associées (7)

Orchestrating chromosome conformation capture analysis with Bioconductor

Cyril Matthey-Doret

Genome-wide chromatin conformation capture assays provide formidable insights into the spatial organization of genomes. However, due to the complexity of the data structure, their integration in multi-omics workflows remains challenging. We present data st ...

Nature Research2024

From Automated Bootstrapping to Collaborative Editing: A Framework for 4D City Reconstruction

Rémi Guillaume Petitpierre, Paul Robert Guhennec, Beatrice Vaienti, Didier Louis Dupertuis

We propose a framework for the construction of 4D scientific models for cities of the past. It leverages both the use of computational methods for bootstrapping, and a collaborative interface for visualisation and edition. This permits to continuously enri ...

Zenodo2023

Meshing of Spiny Neuronal Morphologies using Union Operators

Felix Schürmann, Marwan Muhammad Ahmed Abdellah, Nadir Roman Guerrero, Alessandro Enrico Foni, Elvis Boci, Juan José García Cantero

Neurons are characterized by thin and long interleaving arborizations in which creating accurate mesh models of their cellular membranes is challenging. While union operators are central for CAD/CAM modeling and computer graphics applications, their applic ...

2022

Recent advances in trajectory inference from single-cell omics data

Bart Deplancke, Wouter Jozef L Saelens

Trajectory inference methods have emerged as a novel class of single-cell bioinformatics tools to study cellular dynamics at unprecedented resolution. Initial development focused on adapting methods based on clustering or graph traversal, but recent advanc ...

ELSEVIER2021

Radial Scope: A New Visualization Tool for Structure-Data Relationships

Simon Leonard Dürr

Communication of data associated with chemical structures in a concise fashion can be challenging. Here, we describe an alternative to the classic substrate table that integrates numerical data with struttural changes. These radial-scopeplots facilitate th ...

2020

The SONATA data format for efficient description of large-scale network models

Eilif Benjamin Muller, Werner Alfons Hilda Van Geit, James Gonzalo King, Jean-Denis Georges Emile Courcol, Judit Planas Carbonell, Michael Emiel Gevaert, Juan Bautista Hernando Vieites, Adrien Michel Achille Devresse

Increasing availability of comprehensive experimental datasets and of high-performance computing resources are driving rapid growth in scale, complexity, and biological realism of computational models in neuroscience. To support construction and simulation ...

2020

Circulation of Opinions in Visualization Reading

Dario Rodighiero

Visualizations need interpretation as a way to grasp the meaning of visual representation. They are complex, and often the process of creation is hidden to the public. Because of this, the following text illustrates a way to read the visual representation ...

CEUR.WS.org2016