Jörg HagerEnseignement et PhD A co-dirigé les thèses EPFL de Hélène Ruffieux Cours Nutrition: from molecules to health BIO-441 Le cours aborde les méthodes/technologies pour étudier l'influence de la nutrition sur les processus biologiques et physiopathologiques, fournit une vue d'ensemble du phénotypage moléculaire, comment effectuer des essais cliniques, couvre la nutrigénomique, génétique, micronutriments, microbiote.
Anne-Florence Raphaëlle BitbolI was trained in physics, and always had a strong interest in biology. I am broadly interested in understanding biological phenomena in a quantitative way, through physical concepts and mathematical and computational tools. I investigate the relative impacts of optimization and historical contingency in biological evolution, both at the scale of protein sequences and at the scale of microbial populations.Here is my research group website.Curriculum vitae Here is my complete CV. Professional experience:Since
Marion LeleuExpertise
BioinformaticsGenomicsHight-Throughput SequencingData Mining
Giovanna AmbrosiniCurrent Position Senior Scientist, School of Life Sciences, Bioinformatics Competence Center, école Polythechnique Fédérale de Lausanne, Lausanne.Senior bioinformatician and software engineer with proven experience working in higher education institutions. Solid experience in scientific computing and web design. Proficient in physics and computational genomics, with a focus on high-throughput genomic sequencing data analysis (ChIP-seq, ATAC-seq, RNA-seq, scRNA-seq, and exome sequencing) and other types of
Stewart ColeProfessor Stewart Cole is an international authority in bacterial molecular-genetics and genomics. He has made outstanding contributions in several fields including: bacterial anaerobic electron transport; genome analysis of retroviruses and papillomaviruses; antibiotic resistance mechanisms; and the molecular microbiology of toxigenic clostridia. His studies on isoniazid and multidrug resistance in Mycobacterium tuberculosis, together with his pioneering work on the pathogenicity, evolution and genomics of the tubercle and leprosy bacilli, have made him an undisputed leader in the field of mycobacterial research. The findings of his research are of direct relevance to public health and disease-control in both the developing world and the industrialised nations. He has published over 250 scientific papers and review articles, and holds many patents.
Berend SmitEnseignement et PhD Doctorant·es actuel·les Anastasia Blokhina, Raluca-Ana Kessler, Seyed Amirmohammad Elahi, Juliette Veronique Schleicher, Yutao Li, Xin Jin, Sara Bassetta, Beatriz Bueno Mouriño A dirigé les thèses EPFL de Samantha Lynn Anderson, Daniele Ongari, Andrzej Gladysiak, Seyedmohamad Moosavi, Arunraj Chidambaram, Bardiya Valizadeh, Stavroula Kampouri, Fatmah Ebrahim, Fatma Pelin Uran, Andres Adolfo Ortega Guerrero, Kevin Maik Jablonka, Elias Moubarak, Sauradeep Majumdar, Miriam Jasmin Pougin,
Luciano Andres AbriataEnseignement et PhD Cours Basic and advanced NMR - Level 1 A (EPFL) CH-601(x) Basic and advanced NMR - Level 2 (EPFL) CH-703 The goal is to give a sound theoretical and practical foundation in NMR for various applications in research. PhD students and post-docs who have followed the course successfully should be able to perform modern multi-dimensional NMR experiments independently. Integrative structural biology for Life sciences BIO-643 Recombinant protei
Edouard BugnionEdouard Bugnion joined EPFL in 2012, where his focus is on datacenter systems. His areas of interest include operating systems, datacenter infrastructure (systems and networking), and computer architecture. Before joining EPFL, Edouard spent 18 years in the US, where he studied at Stanford and co-founded two startups: VMware and Nuova Systems (acquired by Cisco). At VMware from 1998 until 2005, he played many roles including CTO. At Nuova/Cisco from 2005 until 2011, he helped build the core engineering team and became the VP/CTO of Ciscos Server, Access, and Virtualization Technology Group, a group that brought to market Ciscos Unified Computing System (UCS) platform for virtualized datacenters. Prof. Bugnion is a Fellow of the ACM. Together with his colleagues, he received the ACM Software System Award for VMware 1.0 in 2009. His paper Disco: Running Commodity Operating Systems on Scalable Multiprocessors" received a Best Paper Award at SOSP '97 and was entered into the ACM SIGOPS Hall of Fame Award in 2008. At EPFL, he received the OSDI 2014 Best Paper Award for his work on the IX dataplane operating system
Stéphane JoostPublications Publications- List of publications
Enseignement et PhD Doctorant·es actuel·les Marco André Vieira Ruas, Manon Laetitia Pribille, Martine Valérie Besse A dirigé les thèses EPFL de Estelle Rochat, Solange Catherine Gaillard, Oliver Michele Selmoni, Anaïs Ladoy, Annie Sandrine Guillaume A co-dirigé les thèses EPFL de Sylvie Stucki, Kevin Leempoel, Martí Bosch Padrós, Andrea Salmi Cours Border Forensics PENS-318 Le cours présentera aux étudiants différentes formes de violence liée
Nicolas Jean Philippe GuexEnseignement et PhD Cours Bioinformatic Analysis of RNA-sequencing (Fall) BIO-693(a) Due to its success, this course will take place from 1st to 5th September 2025 in room AAC 0 20.It introduces the workflows and techniques that are used for the analysis of bulk and single-cell RNA-seq data. It empowers students to understand and analyze their own data. Bioinformatic Analysis of RNA-sequencing (Spring) BIO-693(b) Methods: omics in biomedical research BIOENG-519
Didier TronoAprès des études de médecine à l’Université de Genève et une formation clinique en pathologie, médecine interne et maladies infectieuses à Genève et au Massachusetts General Hospital de Boston, Didier Trono s’engage dans une carrière scientifique au Whitehead Institute du MIT. En 1990, il est recruté par le Salk Institute de San Diego pour lancer un centre de recherche sur le SIDA. Il rentre en Europe sept ans plus tard, avant de prendre en 2004 les rênes de la toute nouvelle faculté des Sciences de la Vie de l’EPFL, dont il orchestre le développement et qu’il dirige jusqu’en 2012. Il participe aujourd’hui activement à la coordination des efforts de la Suisse en vue de l’intégration des nouvelles technologies dans le domaine de la médecine de précision et de la santé personnalisée.
Rizlan Bernier-LatmaniHIGHER EDUCATION
Summer course: Advances in Genome Technology and Bioinformatics Course at the Marine Biology Laboratory in Woods Hole, MA. October 2005.
Ph.D. 2001 Civil and Environmental Engineering, Stanford University, CA
(Advisor, Jim Leckie, Biodegradation of uranyl (UO22 )-complexed citrate and implications for uranyl mobility in the subsurface)
M.S. 1995 Civil and Environmental Engineering, Stanford University, CA
B.S. 1993 Natural Resources with Honors, Cornell University, Ithaca, NY
PROFESSIONAL EMPLOYMENT
2013-present Associate professor with tenure, School of Architecture, Civil and Environmental Engineering, Swiss Federal Institute of Technology, Lausanne
2005-2013 Assistant professor tenure track, School of Architecture, Civil and Environmental Engineering, Swiss Federal Institute of Technology, Lausanne
2001-2005 Post-Graduate Researcher, Scripps Institution of Oceanography, La Jolla, CA (PI: Brad Tebo)
1995-2001 Graduate Research Assistant, Stanford University (Advisor: Jim Leckie)
RESEARCH INTERESTS
Gemicrobiology, metal-bacteria interactions, biological reduction and oxidation of metals, biological nanoparticle formation; Characterization of microbial communities in terrestrial environments; Using genomic, microscopic and spectroscopic tools to understand metal transformations by microorganisms.
ACADEMIC HONORS
Rotary Foundation University Professor grant, 2004.
Swiss National Science Foundation Post-doctoral Fellowship, 2001.
Leon B. Reynolds Memorial Scholarship in the School of Engineering at Stanford University, 1995-96.
Graduated with Honors from Cornell University, 1993.
BIBLIOMETRY
http://www.researcherid.com/rid/E-4398-2011
ResearcherID: E-4398-2011 Graham KnottEnseignement et PhD Cours Methods: from disease models to therapy BIOENG-518 Ce cours décrira les méthodes qui sont à la base des approches translationnelles depuis la génération et la caractérisation des modèles des maladies jusqu'aux applications thérapeutiques. Les bases théoriques seront complétées par des rotations pratiques dans les plateformes technologiques.
Johan AuwerxEnseignement et PhD Doctorant·es actuel·les Wenyu Liu, Maria Boulougouri, Giacomo Vincenzo Giorgio Von Alvensleben A dirigé les thèses EPFL de Pénélope Andreux, Mitsunori Nomura, Evan Graehl Williams, Hongbo Zhang, Virginija Jovaisaite, Elena Katsyuba, Karim Laurent Gariani, Adrienne Joëlle Laurence Mottis, Hao Li, Peiling Luan, Alexis Bachmann, Mario Romani, Xiaoxu Li, Alessia De Masi, Amélia Lalou A co-dirigé les thèses EPFL de Serge Thanh Son Ducommun, Laura Lukjanenko, Joanna Ratajczak, Angélique Sato
