Publications related to Simultaneous segmentation and anatomical labeling of the cerebral vasculature

Related publications (28)

Modular segmentation, spatial analysis and visualization of volume electron microscopy datasets

Volume electron microscopy is the method of choice for the in situ interrogation of cellular ultrastructure at the nanometer scale, and with the increase in large raw image datasets generated, improving computational strategies for image segmentation and s ...

Nature Portfolio2024

Confidence Matters: Applications to Semantic Segmentation

Prabhu Teja Sivaprasad

The successes of deep learning for semantic segmentation can in be, in part, attributed to its scale: a notion that encapsulates the largeness of these computational architectures and the labeled datasets they are trained on. These resource requirements hi ...

EPFL2023

Object Priors for Volumetric Image Segmentation

Pamuditha Udaranga Wickramasinghe

Large training datasets have played a vital role in the success of modern deep learning methods in computer vision. But, obtaining sufficient amount of training data is challenging, specially when annotating volumetric images. This is because fully annotat ...

EPFL2022

Improving the Training of Compact Neural Networks for Visual Recognition

Shuxuan Guo

During the Artificial Intelligence (AI) revolution of the past decades, deep neural networks have been widely used and have achieved tremendous success in visual recognition. Unfortunately, deploying deep models is challenging because of their huge model s ...

EPFL2022

TopoAL: An Adversarial Learning Approach for Topology-Aware Road Segmentation

Pascal Fua, Mateusz Kozinski, Leonardo Citraro, Subeesh Vasu

Most state-of-the-art approaches to road extraction from aerial images rely on a CNN trained to label road pixels as foreground and remainder of the image as background. The CNN is usually trained by minimizing pixel-wise losses, which is less than ideal t ...

2020

An objective comparison of detection and segmentation algorithms for artefacts in clinical endoscopy

Georges Wagnières

We present a comprehensive analysis of the submissions to the first edition of the Endoscopy Artefact Detection challenge (EAD). Using crowd-sourcing, this initiative is a step towards understanding the limitations of existing state-of-the-art computer vis ...

Nature Research2020

Image Clustering Algorithms to Identify Complicated Cerebral Diseases. Description and Comparison

Maria-Alexandra Paun

This article presents two algorithms developed based on two different techniques, from clusterization theory, namely k-means clustering technique and Fuzzy C-means technique, respectively. In this context, the study offers a sustained comparison of the two ...

2020

Automatic Segmentation of Nuclei in Histopathology Images using Encoding-Decoding Convolutional Neural Networks

Pascal Frossard, Beril Besbinar

Accurate and fast segmentation of nuclei in histopathological images plays a crucial role in cancer research for detection and grading, as well as personal treatment. Despite the important efforts, current algorithms are still suboptimal in terms of speed, ...

IEEE2019

Brain tissue segmentation based on MP2RAGE multi-contrast images in 7 T MRI

Tobias Kober

We proposed a method for segmentation of brain tissues-gray matter, white matter, and cerebrospinal fluid-using multi-contrast images, including a T1 map and a uniform T1-weighted image, from a magnetization-prepared 2 rapid acquisition gradient echoes (MP ...

2019

Probabilistic Atlases to Enforce Topological Constraints

Pascal Fua, Graham Knott, Pamuditha Udaranga Wickramasinghe

Probabilistic atlases (PAs) have long been used in standard segmentation approaches and, more recently, in conjunction with Convolutional Neural Networks (CNNs). However, their use has been restricted to relatively standardized structures such as the brain ...

2019

SUBDIVIDE AND CONQUER Active Contours and Surfaces for Biomedical Image Segmentation

Anaïs Laure Marie-Thérèse Badoual

Ongoing advances in imaging techniques create new demands regarding the analysis of images in medicine and biology. Image segmentation is a key step of many image analysis pipelines and its proper execution is a particularly challenging task. This thesis i ...

EPFL2019

Color Image Segmentation Using a Fuzzy Inference System

Matin Macktoobian

A novel method is proposed in the scope of image segmentation that solves this problem by breaking it into two main blocks. The first block's functionality is a method to anticipate the color basis of each segment in segmented images. One of the challenges ...

IEEE2019

Learning Approach to Delineation of Curvilinear Structures in 2D and 3D Images

Agata Justyna Mosinska

Detection of curvilinear structures has long been of interest due to its wide range of applications. Large amounts of imaging data could be readily used in many fields, but it is practically not possible to analyze them manually. Hence, the need for automa ...

EPFL2019

Enhanced MR Image Classification Using Hybrid Statistical and Wavelets Features

Mohammad Khaja Nazeeruddin

Classification of brain tumor is one of the most vital tasks within medical image processing. Classification of images greatly depends on the features extracted from the image, and thus, feature extraction plays a great role in the correct classification o ...

2019

Deep Feature Factorization for Concept Discovery

Sabine Süsstrunk, Radhakrishna Achanta, Edo Collins

We propose Deep Feature Factorization (DFF), a method capable of localizing similar semantic concepts within an image or a set of images. We use DFF to gain insight into a deep convolutional neural network's learned features, where we detect hierarchical c ...

SpringerLink2018

Scale-Adaptive Superpixels

Pascal Fua, Sabine Süsstrunk, Radhakrishna Achanta, Pablo Marquez Neila

Size uniformity is one of the prominent features of superpixels. However, size uniformity rarely conforms to the varying content of an image. The chosen size of the superpixels therefore represents a compromise - how to obtain the fewest superpixels withou ...

Society for Imaging Science and Technology2018

Variational Methods for Human Modeling

Timur Bagautdinov

A large part of computer vision research is devoted to building models and algorithms aimed at understanding human appearance and behaviour from images and videos. Ultimately, we want to build automated systems that are at least as capable as people when i ...

EPFL2018

Faster Algorithms for Integer Programs with Block Structure

Friedrich Eisenbrand, Kim-Manuel Klein, Christoph Hunkenschröder

We consider integer programming problems max {c^Tx : A x = b, l

Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik2018

Network Flow Integer Programming to Track Elliptical Cells in Time-Lapse Sequences

Pascal Fua, Engin Türetken, Xinchao Wang, Carlos Joaquin Becker

We propose a novel approach to automatically tracking elliptical cell populations in time-lapse image sequences. Given an initial segmentation, we account for partial occlusions and overlaps by generating an over-complete set of competing detection hypothe ...

Institute of Electrical and Electronics Engineers2017

Extracting Maya Glyphs from Degraded Ancient Documents via Image Segmentation

Daniel Gatica-Perez, Jean-Marc Odobez, Rui Hu

We present a system for automatically extracting hieroglyph strokes from images of degraded ancient Maya codices. Our system adopts a region-based image segmentation framework. Multi-resolution super-pixels are first extracted to represent each image. A Su ...

Association for Computing Machinery2017