Publications related to Potential implications of differential preservation of testate amoebae shells for paleoenvironmental reconstruction in peatlands

Diagenetic isotope exchange in biocalcites for paleoclimate reconstruction

The oxygen isotope compositions of fossil biocalcites, such as foraminifera, bivalves, brachiopods, and belemnites have allowed for reconstructions of sea surface and deep ocean temperatures throughout the Phanerozoic and constitute the most important reco ...

EPFL2024

Homogeneous Environmental Selection Structures the Bacterial Communities of Benthic Biofilms in Proglacial Floodplain Streams

Leïla Ezzat, Tom Ian Battin, Hannes Markus Peter, Jade Brandani, Tyler Joe Kohler, Stylianos Fodelianakis, Massimo Bourquin, Susheel Bhanu Busi, Grégoire Marie Octave Edouard Michoud

Streams draining proglacial floodplains harbor benthic biofilms comprised of diverse microbial communities. These high-mountain ecosystems are rapidly changing with climate warming, and it is therefore critical to better understand the mechanisms underlyin ...

AMER SOC MICROBIOLOGY2023

Food web structure and energy flux dynamics, but not taxonomic richness, influence microbial ecosystem functions in a Sphagnum-dominated peatland

Alexandre Buttler, Edward Mitchell, Vincent Eric Jules Jassey

Soil microbial communities are vital for multiple ecosystem processes and services. In particular, soil microbial food webs are key determinants of soil biodiversity, functioning and stability. Unclear, however, is how struc-tural features of food webs, su ...

ELSEVIER FRANCE-EDITIONS SCIENTIFIQUES MEDICALES ELSEVIER2023

Contrasting Microbiome Dynamics of Putative Denitrifying Bacteria in Two Octocoral Species Exposed to Dissolved Organic Carbon (DOC) and Warming

Nils Rädecker, Claudia Isabella Pogoreutz

Mutualistic nutrient cycling in the coral-algae symbiosis depends on limited nitrogen (N) availability for algal symbionts. Denitrifying prokaryotes capable of reducing nitrate or nitrite to dinitrogen could thus support coral holobiont functioning by limi ...

2022

Influence of Microplastics on Microbial Structure, Function, and Mechanical Properties of Stream Periphyton

Renata Behra, Kristin Schirmer, Ahmed Tlili

Periphyton is a freshwater biofilm composed of prokaryotic and eukaryotic communities that occupy rocks and sediments, forming the base of the food web and playing a key role in nutrient cycling. Given the large surface that periphyton comprises, it may al ...

FRONTIERS MEDIA SA2022

Catchment characteristics and seasonality control the composition of microbial assemblages exported from three outlet glaciers of the Greenland Ice Sheet

Tyler Joe Kohler, Martina Andrea Schön

Glacial meltwater drains into proglacial rivers where it interacts with the surrounding landscape, collecting microbial cells as it travels downstream. Characterizing the composition of the resulting microbial assemblages in transport can inform us about i ...

Frontiers Media SA2022

Presence of algal symbionts affects denitrifying bacterial communities in the sea anemone Aiptasia coral model

Anders Meibom, Nils Rädecker, Claudia Isabella Pogoreutz

The coral-algal symbiosis is maintained by a constant and limited nitrogen availability in the holobiont. Denitrifiers, i.e., prokaryotes reducing nitrate/nitrite to dinitrogen, could contribute to maintaining the nitrogen limitation in the coral holobiont ...

2022

The molecular treasure box of environmental Vibrio cholerae strains

Natalia Carolina Drebes Dorr

Cholera pandemics have been affecting humankind for centuries and are still considered a major public health problem, especially in regions around the world with poor access to clean water and sanitation. Cholera pandemics are caused by a specific lineage ...

EPFL2021

Assessing the responses of Sphagnum micro-eukaryotes to climate changes using high throughput sequencing

Alexandre Buttler, Enrique Lara, Edward Mitchell, Mariusz Lamentowicz, Vincent Eric Jules Jassey

Current projections suggest that climate warming will be accompanied by more frequent and severe drought events. Peatlands store ca. one third of the world's soil organic carbon. Warming and drought may cause peatlands to become carbon sources through stim ...

PEERJ INC2020

Heterotrophic Foraminifera Capable of Inorganic Nitrogen Assimilation

Anders Meibom, Charlotte Madeleine Nicole Lekieffre, Emmanuelle Geslin

Nitrogen availability often limits biological productivity in marine systems, where inorganic nitrogen, such as ammonium is assimilated into the food web by bacteria and photoautotrophic eukaryotes. Recently, ammonium assimilation was observed in kleptopla ...

Frontiers Media SA2020

Evaluating Alternative Metacommunity Hypotheses for Diatoms in the McMurdo Dry Valleys Using Simulations and Remote Sensing Data

Tyler Joe Kohler

Diatoms are diverse and widespread freshwater Eukaryotes that make excellent microbial subjects for addressing questions in metacommunity ecology. In the McMurdo Dry Valleys of Antarctica, the simple trophic structure of glacier-fed streams provides an ide ...

2020

Shift in plant-soil interactions along a lakeshore hydrological gradient

Alexandre Buttler, Luca Bragazza, Wenjuan Feng, Mathieu Raymond Santonja

Wetlands occupy the transitional zone between aquatic and terrestrial systems. Hydrological conditions have significant influence on wetland plant communities and soil biogeochemistry. However, our knowledge about plant-soil interactions in wetlands along ...

ELSEVIER2020

Ammonium is the preferred source of nitrogen for planktonic foraminifer and their dinoflagellate symbionts

Anders Meibom, Charlotte Madeleine Nicole Lekieffre, Emmanuelle Geslin

The symbiotic planktonic foraminiferaOrbulina universainhabits open ocean oligotrophic ecosystems where dissolved nutrients are scarce and often limit biological productivity. It has previously been proposed thatO. universameets its nitrogen (N) requiremen ...

ROYAL SOC2020

Towards simple tools to assess functional effects of contaminants on natural microbial and invertebrate sediment communities

Sophie Campiche, Maria del Carmen Casado Martinez, Benoît Jean Dominique Ferrari

Surface sediments can accumulate contaminants that affect microorganisms and invertebrates and disturb benthic ecological functions. However, effects of contaminants on ecological functions supported by sediment communities are understudied. Here, we teste ...

SPRINGER HEIDELBERG2020

Microbially Mediated Release of As from Mekong Delta Peat Sediments

Rizlan Bernier-Latmani, Manon Frutschi, Yuheng Wang, Karen Elda Viacava Romo, Luca Loreggian, Maria Pilar Asta Andres

Peat layers within alluvial sediments are considered effective arsenic (As) sinks under reducing conditions due to the binding of As(III) to thiol groups in natural organic matter (NOM) and the formation of As-bearing sulfide phases. However, their possibl ...

2019

Effects of climate warming on Sphagnum photosynthesis in peatlands depend on peat moisture and species-specific anatomical traits

Constant Signarbieux, Vincent Eric Jules Jassey

Climate change will influence plant photosynthesis by altering patterns of temperature and precipitation, including their variability and seasonality. Both effects may be important for peatlands as the carbon (C) sink potential of these ecosystems depends ...

WILEY2019

Dispersal limitations and historical factors determine the biogeography of specialized terrestrial protists

Enrique Lara, Edward Mitchell, Bertrand Fournier, Luca Bragazza, Mariusz Lamentowicz

Recent studies show that soil eukaryotic diversity is immense and dominated by micro-organisms. However, it is unclear to what extent the processes that shape the distribution of diversity in plants and animals also apply to micro-organisms. Major diversif ...

WILEY2019

Importance of mixotrophic flagellates during the ice-free season in lakes located along an elevational gradient

Hannes Markus Peter

Mixotrophy seems to be widespread among phytoplankton, but whether this strategy is more relevant in oligotrophic lakes remains unclear. Here, we tested the hypothesis that the relative abundance of mixotrophic flagellates in lakes increases along an eleva ...

Springer2019

Effects of Sphagnum Leachate on Competitive Sphagnum Microbiome Depend on Species and Time

Alexandre Buttler, Luca Bragazza, Constant Signarbieux, Vincent Eric Jules Jassey, Bjorn Jozef Maria Robroek, Samuel Thomas Gabriel Hamard

Plant specialized metabolites play an important role in soil carbon (C) and nutrient fluxes. Through anti-microbial effects, they can modulate microbial assemblages and associated microbial-driven processes, such as nutrient cycling, so to positively or ne ...

Frontiers Media SA2019

Comparison of two carbon-nitrogen regulatory models calibrated with mesocosm data

Shubham Krishna

Marine phytoplankton can regulate their stoichiometric composition in response to variations in the availability of nutrients, light and the pH of seawater. Varying elemental composition of photoautotrophs affects several important ecological and biogeoche ...

2019