Publications related to Programmable supramolecular nanoarchitectures for targeting biological patterns

Related publications (8)

Towards multimodal foundation models in molecular cell biology

The rapid advent of high-throughput omics technologies has created an exponential growth in biological data, often outpacing our ability to derive molecular insights. Large-language models have shown a way out of this data deluge in natural language proces ...

2025

Targeting protein-ligand neosurfaces with a generalizable deep learning tool

Bruno Emanuel Ferreira De Sousa Correia, Sebastian Maerkl, Luc Reymond, Philippe Schwaller, Pablo Gainza Cirauqui, Sandrine Madeleine Suzanne Georgeon, Leo Scheller, Anthony Marchand, Martin Pacesa, Arne Schneuing, Stephen Michael Buckley, Rebecca Manuela Neeser, Joseph Giuseppe Schmidt, Maddalena Elia, Yangyang Miao, Evgenia Elizarova

Molecular recognition events between proteins drive biological processes in living systems1. However, higher levels of mechanistic regulation have emerged, in which protein-protein interactions are conditioned to small molecules2, 3, 4-5. Despite recent ad ...

NATURE PORTFOLIO2025

Evolutionarily recent transcription factors partake in human cell cycle regulation

Didier Trono, Sandra Eloise Kjeldsen, Evaristo Jose Planet Letschert, Alexandre Coudray, Filipe Amândio Brandão Sanches Vong Martins, Charlène Mireille Raymonde Raclot, Olga Marie Louise Rosspopoff, Cyril David Son-Tuyên Pulver, Alex Russell Lederer, Romain Forey, Martina Begnis

The cell cycle is a fundamental process in eukaryotic biology and is accordingly controlled by a highly conserved core signaling cascade. However, whether recently evolved proteins also influence this process is unclear. Here, we systematically map the inf ...

2025

PeSTo-Carbs: Geometric Deep Learning for Prediction of Protein-Carbohydrate Binding Interfaces

Matteo Dal Peraro, Lucien Fabrice Krapp, Parth Bibekar

The Protein Structure Transformer (PeSTo), a geometric transformer, has exhibited exceptional performance in predicting protein-protein binding interfaces and distinguishing interfaces with nucleic acids, lipids, small molecules, and ions. In this study, w ...

Amer Chemical Soc2024

TMX5/TXNDC15, a natural trapping mutant of the PDI family is a client of the proteostatic factor ERp44

Maurizio Molinari

The ER is the organelle of nucleated cells that produces lipids, sugars, and proteins. More than 20 ER-resident members of the protein disulfide isomerase (PDI) family regulate formation, isomerization, and disassembly of covalent bonds in newly synthesize ...

LIFE SCIENCE ALLIANCE LLC2024

Mutant aerolysin and uses thereof

Matteo Dal Peraro, Chan Cao

Provided herein are aerolysin polypeptides and/or mutant aerolysin monomers comprising modified amino acid sequences that could have improved substrate analyte, such as (poly)nucleotide and peptide, improved reading properties such as enhanced substrate an ...

2024

Semiaromatic Polyamides with Re-Entrant Chain Folding Templated by "U-Turn" Repeat Units

Rosario Scopelliti, Farzaneh Fadaei Tirani, John Christopher Plummer, Holger Frauenrath, Bilal Özen, Julien Philippe Cretenoud, Michael Alan Giffin

Biopolymers often show deterministic chain folding templated by repeat unit sequences whose conformations are locked in by intramolecular interactions. In this work, we have used repeat units based on rigid anthracene or acridine scaffolds, which we refer ...

American Chemical Society2021

Hybrid hydrogels for load-bearing implants

Céline Samira Wyss

Load-bearing tissues such as articular cartilage or meniscus are not infallible. They might fail due to trauma, over-solicitations, or diseases, which could subsequently alter the mobility of the patient. Repairing these damaged tissues in a minimally inva ...

EPFL2021