Publications related to Review: microbial biocenoses in pristine aquifers and an assessment of investigative methods

Related publications (28)

Nature-based solution enhances resilience to flooding and catalyzes multi-benefits in coastal cities in the Global South

Jérôme Chenal, Paolo Perona, Charlotte Grossiord, Montana Marshall, Emmanuel Qays Dubois

Coastal cities are facing a rise in groundwater levels induced by sea level rise, further triggering saturation excess flooding where groundwater levels reach the topographic surface or reduce the storage capacity of the soil, thus stressing the existing i ...

2024

Contribution of standardized indexes to understand groundwater level fluctuations in response to meteorological conditions in cold and humid climates

Emmanuel Qays Dubois

Understanding the fluctuations in groundwater levels in response to meteorological conditions is challenging, especially given the slow transit time associated with groundwater reservoirs and the short duration of time series for groundwater levels. Nevert ...

2024

Data-driven statistical optimization of a groundwater monitoring network

Andrea Rinaldo

We propose a comparative study of three different methods aimed at optimizing existing groundwater monitoring networks. Monitoring piezometric heads in subsurface porous formations is crucial at regional scales to properly characterize the relevant subsurf ...

Elsevier2024

Organic matters, but inorganic matters too: column examination of elevated mercury sorption on low organic matter aquifer material using concentrations and stable isotope ratios

Lorenz Schwab

Sorption of mercury (Hg) in soils is suggested to be predominantly associated with organic matter (OM). However, there is a growing collection of research that suggests that clay minerals and oxides are also important solid phases for the sorption of solu ...

2024

Reconstruction and analysis of genome-scale metabolic networks in single organisms and microbial communities

Evangelia Vagena

Microorganisms are a key component in the chain of life. They are essential for agriculture, produce a large proportion of oxygen, and play a central role in the cycle of elements. Microorganisms are widely used in the production of food and alcoholic beve ...

EPFL2024

Benchmarking informatics approaches for virus discovery: caution is needed when combining in silico identification methods

Jaspreet Singh Saini

Understanding the ecological impacts of viruses on natural and engineered ecosystems relies on the accurate identification of viral sequences from community sequencing data. To maximize viral recovery from metagenomes, researchers frequently combine viral ...

Amer Soc Microbiology2024

A comprehensive review on geomembrane systems application in hydropower

Giovanni De Cesare, Samuel Luke Vorlet

Geomembrane systems have been used at hydropower plants as rehabilitation and mitigation technology for several decades and are now used worldwide. In the context of planning an energy transition that promotes the sustainable use of water resources for ene ...

2024

Watertable fluctuations in coastal unconfined aquifers with a sloping sea boundary: Vertical flow and dynamic effective porosity effects

David Andrew Barry, Zhaoyang Luo

Interactions between the tide and sloping sea boundary make watertable fluctuations in coastal unconfined aquifers complicated. Based on a perturbation method, we derived a new analytical solution to predict watertable fluctuations for coastal unconfined a ...

2023

Effects of Unsaturated Flow on Salt Distributions in Tidally Influenced Coastal Unconfined Aquifers

David Andrew Barry, Zhaoyang Luo

Unsaturated flow influences both the seawater extent under steady-state conditions and the propagation of tides in coastal aquifers. However, its effects on salt distributions in tidally influenced coastal aquifers are little investigated. The present stud ...

2023

Sulfurospirillum diekertiae sp. nov., a tetrachloroethene-respiring bacterium isolated from contaminated soil

Christof Holliger, Julien Maillard

Two anaerobic, tetrachloroethene- (PCE-) respiring bacterial isolates, designated strain ACSDCE T and strain ACSTCE, were characterized using a polyphasic approach. Cells were Gram-stain-negative, motile, non-spore-forming and shared a vibrioid- to spirill ...

Society for General Microbiology2023

Comparison of Three Imputation Methods for Groundwater Level Timeseries

Andrea Rinaldo

This study compares three imputation methods applied to the field observations of hydraulic head in subsurface hydrology. Hydrogeological studies that analyze the timeseries of groundwater elevations often face issues with missing data that may mislead bot ...

MDPI2023

Modeling, analysis, and design of complex biological networks

Mohammadomid Oftadeh

Automating experimental procedures has resulted in an unprecedented increase in the volume of generated data, which, in turn, has caused an accumulation of unprocessed data. As a result, the need to develop tools to analyze data systematically has been ris ...

EPFL2023

Atomic scale volume and grain boundary diffusion elucidated by in situ STEM

Johann Michler, Xavier Maeder, Laszlo Pethö

Diffusion is one of the most important phenomena studied in science ranging from physics to biology and, in abstract form, even in social sciences. In the field of materials science, diffusion in crystalline solids is of particular interest as it plays a p ...

Nature Portfolio2023

Evaluation of genetic demultiplexing of single-cell sequencing data from model species

Clement Helsens

Single-cell sequencing (sc-seq) provides a species agnostic tool to study cellular processes. However, these technologies are expensive and require sufficient cell quantities and biological replicates to avoid artifactual results. An option to address thes ...

LIFE SCIENCE ALLIANCE LLC2023

Using continuous electrical conductivity measurements to derive major solute concentrations in karst systems

Paolo Benettin

Hydrochemical data of karst springs provide valuable insights into the internal hydrodynamical functioning of karst systems and support model structure identification. However, the collection of high-frequency time series of major solute species is limited ...

WILEY2023

The biofilm ecology of proglacial floodplain streams

Jade Brandani

Glacial forelands figure among the most dynamic landscapes on Earth, and their formation is currently accelerating given glacier shrinkage. Draining these forelands are streams hosting unique microbial communities, which have the capacity to impact both th ...

EPFL2023

Fish Diversity in Relation to Littoral Habitats in Three Basins of Lake Kivu (East Africa)

Alfred Johny Wüest

In total, 28 of the 29 fish species reported from the Lake Kivu basin occur in the littoral zone of the lake, but information about their structure, occurrence, and the habitats affecting their distribution is largely lacking. The lake's inshore area is po ...

MDPI2023

Applying the Principal Component Analysis for a deeper understanding of the groundwater system: case study of the Bacchiglione Basin (Veneto, Italy)

Andrea Rinaldo

In hydrogeology, it is often difficult to fully understand the hydraulic factors affecting the recharge of groundwater systems. Particularly, at a regional scale, the groundwater system can have different drivers depending on the considered area, i.e., soi ...

PAGEPRESS PUBL2022

Impacts of climate change on Swiss alluvial aquifers - A quantitative forecast focused on natural and artificial groundwater recharge by surface water infiltration

Carl Love Mikael Råman Vinnå, Sebastiano Piccolroaz

The sensitivity of future groundwater recharge and temperature development was investigated for three alluvial aquifers in the urban agglomeration of the city of Basel, Switzerland. For selected climate projections groundwater recharge and the associated t ...

ELSEVIER2022

Approximate analytical solutions for assessing the effects of unsaturated flow on seawater extent in thin unconfined coastal aquifers

David Andrew Barry, Zhaoyang Luo

This study develops approximate analytical solutions for seawater extent in unconfined coastal aquifers considering unsaturated flow, and assuming steady-state, sharp-interface conditions, for both constant flux (flux-controlled aquifers) and constant head ...

2022