On Exploring Genome Rearrangement Phylogenetic Patterns

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Local and global inference methods have been developed to infer structural contacts from multiple sequence alignments of homologous proteins. They rely on correlations in amino acid usage at contacting sites. Because homologous proteins share a common ance ...

Accurate spatiotemporal modeling of conditions leading to moderate and large wildfires provides better understanding of mechanisms driving fire-prone ecosystems and improves risk management. Here, we develop a joint model for the occurrence intensity and t ...

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In certain cases of astronomical data analysis, the meaningful physical quantity to extract is the ratio R between two data sets. Examples include the lensing ratio, the interloper rate in spectroscopic redshift samples, and the decay rate of gravitational ...

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Since its emergence in December 2019, Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has spread globally and become a major public health burden. Despite its close phylogenetic relationship to SARS-CoV, SARS-CoV-2 exhibits increased human-to- ...

On Exploring Genome Rearrangement Phylogenetic Patterns

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The microbial genomics of glacier-fed streams: adaptations to an extreme ecosystem

A Pareto Dominance Principle for Data-Driven Optimization

Bacterial diversity dominates variable macrophage responses of tuberculosis patients in Tanzania

Statistical Inference for Inverse Problems: From Sparsity-Based Methods to Neural Networks

Impact of phylogeny on structural contact inference from protein sequence data

Spatiotemporal wildfire modeling through point processes with moderate and extreme marks

Machine Learning Security in Industry: A Quantitative Survey

Analysis of a Class of Multilevel Markov Chain Monte Carlo Algorithms Based on Independent Metropolis–Hastings

Higher Order Asymptotics: Applications to Satellite Conjunction and Boundary Problems

An Unbiased Method of Measuring the Ratio of Two Data Sets

From Trees to Barcodes and Back Again: A Combinatorial, Probabilistic and Geometric Study of a Topological Inverse Problem

Extracting phylogenetic dimensions of coevolution reveals hidden functional signals

Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load

Transposon-activated POU5F1B promotes colorectal cancer growth and metastasis

Identifying and Characterizing Trans Women in the Swiss HIV Cohort Study as an Epidemiologically Distinct Risk Group

Protein language models trained on multiple sequence alignments learn phylogenetic relationships

The microbiome of cryospheric ecosystems

HIERARCHICAL MARKOV CHAIN MONTE CARLO METHODS FOR BAYESIAN INVERSE PROBLEMS

Convex Quantization Preserves Logconcavity

Disparate temperature-dependent virus-host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium