Publications related to Surpassing light inhomogeneities in structured-illumination microscopy with FlexSIM

Related publications (17)

Lack of embryonic skeletal muscle in mice leads to abnormal mineral deposition and growth

Developing bones can be severely impaired by a range of disorders where muscular loading is abnormal. Recent work has indicated that the effects of absent skeletal muscle on bones are more severe early in development, with rudiment length and mineralizatio ...

Elsevier2025

Monocrystalline Gold Metasurface to Control Anisotropic Second-Harmonic Generation

Olivier Martin, Sergejs Boroviks

The tensorial nature of the nonlinear susceptibility of gold surfaces is revealed and exploited by comparing crystalline and polycrystalline thin films. The {111}-type surfaces of crystalline gold exhibit anisotropic features that are absent at the surface ...

WILEY-V C H VERLAG GMBH2025

Open-source microscope add-on for structured illumination microscopy

Matthias Lütolf, Theo Lasser, Aleksandra Radenovic, John McKinney, Georg Fantner, Olivier François Venzin, Mélanie Thérèse Marie Hannebelle, Tomas Lukes, Samuel Mendes Leitão, Antonius Chrisnandy, Chiara Toniolo, Andrew Charles Oates, Esther Braun, Prabhu Prasad Swain, Nathan Cyprien Arsène Ronceray

Super-resolution techniques expand the abilities of researchers who have the knowledge and resources to either build or purchase a system. This excludes the part of the research community without these capabilities. Here we introduce the openSIM add-on to ...

Nature Portfolio2024

Ultrastructural characterization of tau pathology in the human post‐mortem Alzheimer’s disease brain

Henning Paul-Julius Stahlberg, Louis Travers, Philippine Laure Diane Schneider, Eglantine Vialaneix, Amanda Jennifer Lewis

Neuropathological tau tangles in Alzerheimer’s disease (AD) have been roughly characterized into pre‐tangles, mature tangles and ghost tangles. However, to date, their maturation in the human brain is poorly understood. Here, we aimed to define the structu ...

Wiley2024

Deep-prior ODEs augment fluorescence imaging with chemical sensors

Michaël Unser

To study biological signalling, great effort goes into designing sensors whose fluorescence follows the concentration of chemical messengers as closely as possible. However, the binding kinetics of the sensors are often overlooked when interpreting cell si ...

Nature Research2024

Selectively Exciting and Probing Radiative Plasmon Modes on Short Gold Nanorods by Scanning Tunneling Microscope-Induced Light Emission

Olivier Martin

We study the plasmon modes of gold nanorods (as short as similar to 100 nm) on a nonmetallic conductive substrate using scanning tunneling microscope-induced light emission (STM-LE) with a nonplasmonic tungsten tip at room temperature in high vacuum (10-7 ...

AMER CHEMICAL SOC2023

Dynamic Fourier ptychography with deep spatiotemporal priors

Michaël Unser, Pakshal Narendra Bohra

Fourier ptychography (FP) involves the acquisition of several low-resolution intensity images of a sample under varying illumination angles. They are then combined into a high-resolution complex-valued image by solving a phase-retrieval problem. The object ...

IOP Publishing Ltd2023

NIR Fluorescence lifetime macroscopic imaging with a time-gated SPAD camera

Claudio Bruschini, Edoardo Charbon, Arin Can Ülkü

The performance of SwissSPAD2 (SS2), a large scale, widefield time-gated CMOS SPAD imager developed for fluorescence lifetime imaging, has recently been described in the context of visible range and fluorescence lifetime imaging microscopy (FLIM) of dyes w ...

SPIE-INT SOC OPTICAL ENGINEERING2022

QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy

Arne Seitz

The community-driven initiative Quality Assessment and Reproducibility for Instruments & Images in Light Microscopy (QUAREP-LiMi) wants to improve reproducibility for light microscopy image data through quality control (QC) management of instruments and im ...

Nature Publishing Group2021

Towards quantum 3D imaging devices

Claudio Bruschini, Edoardo Charbon, Samuel Burri, Arin Can Ülkü, Paul Mos, Michael Alan Wayne

We introduce a new generation of 3D imaging devices based on quantum plenoptic imaging. Position-momentum entanglement and photon number correlations are exploited to provide a scan-free 3D image after post-processing of the collected light intensity signa ...

2021

Large-Format Time-Gated SPAD Cameras for Real-Time Phasor-Based FLIM

Arin Can Ülkü

Fluorescence lifetime imaging microscopy (FLIM) is an imaging modality often used to monitor biochemical properties of a cell or a tissue. In addition to conventional fluorescence microscopy features, such as selective labeling and non-invasiveness, FLIM e ...

EPFL2021

Weakly Supervised Deep Learning Methods for Biomicroscopy

Adrian Shajkofci

Optical microscopy, an invaluable tool in biology and medicine to observe and quantify cellular function, organ development, or disease mechanisms, requires constant trade-offs between spatial, temporal, and spectral resolution, invasiveness, acquisition t ...

EPFL2021

Benefiting From Bicubically Down-Sampled Images for Learning Real-World Image Super-Resolution

Jean-Philippe Thiran, Mohammad Saeed Rad, Claudiu-Cristian Musat, Hazim Kemal Ekenel, Seyedbehzad Bozorgtabar, Thomas Yu

Super-resolution (SR) has traditionally been based on pairs of high-resolution images (HR) and their low-resolution (LR) counterparts obtained artificially with bicubic downsampling. However, in real-world SR, there is a large variety of realistic image de ...

2021

Time-lapse high-resolution microscopy to study the morphogenesis of microorganisms

Mélanie Thérèse Marie Hannebelle

Mycobacterium tuberculosis, the etiological agent for the tuberculosis disease, is a bacterial pathogen thought to infect about a quarter of the global human population. It is the first cause of death among infectious diseases, and is most prevalent in low ...

EPFL2020

Subcellular Chemical Imaging: New Avenues in Cell Biology

Melissa Kathleen Passarelli

To better understand the physiology and acclimation capability of the cell, one of the great challenges of the future is to access the interior of a cell and unveil its chemical landscape (composition and distribution of elements and molecules). Chemical i ...

ELSEVIER SCIENCE LONDON2020

Development of Sample-Adaptable Holders for Lightsheet Microscopy

Olivier Burri, Thierry Laroche, Arne Seitz, Lalit Kumar Dubey

Multi-user core microscopy facilities are often faced with the challenge to adapt or modify existing instruments. This is essential in order to fulfill the requirements of the user community, who wants to image a wide range of model organisms with varying ...

2019

Novel daylighting system based on advanced embedded optical microstructures for various facade orientation and climates

Jing Gong

The design of highly glazed building has become a worldwide trend in modern architecture. However, glazing may induce large thermal loss in winter while increase cooling load in summer, and it may also cause glare. In order to solve the problems, a novel m ...

EPFL2019