Publications related to Generating High Fidelity Surface Meshes of Neocortical Neurons using Skin Modifiers

Related publications (25)

Semantic Shape Editing with Parametric Implicit Templates

We propose a semantic shape editing method to edit 3D triangle meshes using parametric implicit surface templates, benefiting from the many advantages offered by analytical implicit representations, such as infinite resolution and boolean or blending opera ...

ACM Association for Computing Machinery2024

Adaptive Finite Elements with Large Aspect Ratio. Application to Aluminium Electrolysis

Paride Passelli

The goal of this work is to use anisotropic adaptive finite elements for the numerical simulation of aluminium electrolysis. The anisotropic adaptive criteria are based on a posteriori error estimates derived for simplified problems. First, we consider an ...

EPFL2024

Fluorescence microscopy: A statistics-optics perspective

Aleksandra Radenovic

Fundamental properties of light unavoidably impose features on images collected using fluorescence microscopes. Accounting for these features is often critical in quantitatively interpreting microscopy images, especially those gathering information at scal ...

Amer Physical Soc2024

A multi-modal fitting approach to construct single-neuron models with patch clamp and high-density microelectrode arrays

Henry Markram, Werner Alfons Hilda Van Geit, Tanguy Pierre Louis Damart, Darshan Mandge, Aurélien Tristan Jaquier, Mickael Maurice Zbili

In computational neuroscience, multicompartment models are among the most biophysically realistic representations of single neurons. Constructing such models usually involves the use of the patch-clamp technique to record somatic voltage signals under diff ...

2024

A Full-Wave Reference Simulator for Computing Surface Reflectance

Mengqi Xia

Computing light reflection from rough surfaces is an important topic in computer graphics. Reflection models developed based on geometric optics fail to capture wave effects such as diffraction and interference, while existing models based on physical opti ...

ASSOC COMPUTING MACHINERY2023

Deep Learning for 3D Surface Modelling and Reconstruction

Benoît Alain René Guillard

In recent years, there has been a significant revolution in the field of deep learning, which has demonstrated its effectiveness in automatically capturing intricate patterns from large datasets. However, the majority of these successes in Computer Vision ...

EPFL2023

A method and system for enforcing smoothness constraints on surface meshes from a graph convolutional neural network

Pascal Fua, Pamuditha Udaranga Wickramasinghe

A method for enforcing smoothness constraints on surface meshes produced by a Graph Convolutional Neural Network (GCNN) including the steps of reading image data from a memory, the image data including two-dimensional image data representing a three-dimens ...

2023

Practical computational imaging by use of spatiotemporal light modulation: from simulations to applications in biological microscopy

François Thierry M Marelli

Optical microscopy is an essential tool for biologists, who are often faced with the need to overcome the spatial and temporal resolution limitations of their devices to capture finer details. As upgrading imaging hardware is expensive, computational metho ...

EPFL2023

Region Extraction in Mesh Intersection

Annalisa Buffa, Pablo Antolin Sanchez, Emiliano Cirillo

Region extraction is a very common task in both Computer Science and Engineering with several applications in object recognition and motion analysis, among others. Most of the literature focuses on regions delimited by straight lines, often in the special ...

2023

DyNCA: Real-time Dynamic Texture Synthesis Using Neural Cellular Automata

Sabine Süsstrunk, Tong Zhang, Ehsan Pajouheshgar, Yitao Xu

Current Dynamic Texture Synthesis (DyTS) models can synthesize realistic videos. However, they require a slow iterative optimization process to synthesize a single fixed-size short video, and they do not offer any post-training control over the synthesis p ...

Ieee Computer Soc2023

Machine-Learning-Enhanced Procedural Modeling for 4D Historical Cities Reconstruction

Frédéric Kaplan, Isabella Di Lenardo, Rémi Guillaume Petitpierre, Beatrice Vaienti

The generation of 3D models depicting cities in the past holds great potential for documentation and educational purposes. However, it is often hindered by incomplete historical data and the specialized expertise required. To address these challenges, we p ...

2023

Microfluidic devices for automated analysis of ingested bacteria in the Caenorhabditis elegans intestine

Farzad Rezaeianaran

In this thesis, we explored on-chip high-resolution imaging of the fate of intestinal bacteria and bacterial products in Caenorhabditis elegans (C. elegans). In the first part, we carried out high-resolution z-stack fluorescent imaging of Red Fluorescent P ...

EPFL2023

Digital reconstruction of the mammalian spinal cord: from anatomical reference volume to cell type atlas of the mouse spinal cord

Ihor Kuras

The spinal cord is an elongated nervous structure that together with the brain forms the central nervous system. It relays sensory and motor information between the brain and the body, thus controlling most somatic and autonomic body functions. In recent y ...

EPFL2023

Molecular reconstruction and simulation of the Neuron-Glia-Vasculature system

Polina Shichkova

The outstanding information processing capacity of the brain relies on numerous molecular mechanisms. It is an extremely energy-expensive function, which involves specialization and collaboration of different cell types. A common framework to study the com ...

EPFL2023

Meshing of Spiny Neuronal Morphologies using Union Operators

Felix Schürmann, Marwan Muhammad Ahmed Abdellah, Nadir Roman Guerrero, Alessandro Enrico Foni, Elvis Boci, Juan José García Cantero

Neurons are characterized by thin and long interleaving arborizations in which creating accurate mesh models of their cellular membranes is challenging. While union operators are central for CAD/CAM modeling and computer graphics applications, their applic ...

2022

Synthesis and Analysis of 3D shapes with Geometric Deep Learning in Computer-Aided Engineering

Edoardo Remelli

In this thesis, we advocate that Computer-Aided Engineering could benefit from a Geometric Deep Learning revolution, similarly to the way that Deep Learning revolutionized Computer Vision. To do so, we consider a variety of Computer-Aided Engineering pr ...

EPFL2022

Differentiable Signed Distance Function Rendering

Wenzel Alban Jakob, Delio Aleardo Vicini, Sébastien Nicolas Speierer

Physically-based differentiable rendering has recently emerged as an attractive new technique for solving inverse problems that recover complete 3D scene representations from images. The inversion of shape parameters is of particular interest but also pose ...

ASSOC COMPUTING MACHINERY2022

Geometrical Treatise on the Modelling of 3D Particulate Inclusion-Matrix Microstructures with an Application to Historical Stone Masonry Walls

Mahmoud S. M. Shaqfa

As historical stone masonry structures are vulnerable and prone to damage in earthquakes, investigating their structural integrity is important to reduce injuries and casualties while preserving their historical value. Stone masonry is a composite material ...

EPFL2022

A virtual microstructure generator for 3D stone masonry walls

Katrin Beyer, Mahmoud S. M. Shaqfa

Detailed micromodel simulations of stone masonry walls require as input a 3D mesh that represents a realistic arrangement of stones in the masonry wall. In this paper, we constructed the first 3D masonry microstructures to derive 2D and 3D finite or discre ...

ELSEVIER2022

An a posteriori error estimator for isogeometric analysis on trimmed geometries

Annalisa Buffa, Rafael Vazquez Hernandez, Ondine Gabrielle Chanon

Trimming consists of cutting away parts of a geometric domain, without reconstructing a global parametrization (meshing). It is a widely used operation in computer-aided design, which generates meshes that are unfitted with the described physical object. T ...

2022