Publications related to Optofluidics of plants

Related publications (32)

Experimental quantification of hydrodynamic effects on plant cutting roots development

Yahel Eliyahu-Yakir, Junjia Kang, Paolo Perona

This paper focuses on the development of azimuthal root asymmetry in plant cuttings and related effects on the resistance to flow erosion in poorly cohesive sediment. We aim to differentiate the effects that hydrodynamic forces acting on the plant (cutting ...

CRC Press2025

High-throughput isolation of anaerobic arsenic-transforming microorganisms

Hugo Sallet

Arsenic (As) is a toxic metalloid that occurs naturally and is widely distributed in the environment. The inorganic compounds arsenite (As(III)) and arsenate (As(V)) are the most prevalent As species in the biosphere, the former being predominant in reduci ...

EPFL2025

Drag reduction of flexible disks through vortex ring manipulation

Mrudhula Baskaran

Extreme weather events are increasing in frequency in recent years due to global climate change. These events damage infrastructure and pose an open challenge to engineers to design more weather-resistant infrastructure. As engineers, we turn to nature fo ...

EPFL2024

Electronic readout of DNA amplification in nanoliter chambers. Strategies towards highly parallel semiconductor-based nucleic acid amplification testing

Saurabh Tomar

Polymerase chain reaction (PCR) has been the most significant driver in the field of nucleic acid testing (NAT) since its invention. Popularized as an abbreviation by the Covid-19 pandemic, PCR-based methods are the gold standard in the field of diagnostic ...

EPFL2023

Development of soft microscopic implants and acoustically-powered machines for biomedical applications

Murat Kaynak

The development of miniaturized machines that can actively cross barriers, navigate through heterogeneous materials and access remote sites can revolutionize environmental inspection and targeted therapy. Seminal work demonstrated the feasibility of follow ...

EPFL2021

Plant responses to rising vapor pressure deficit

Charlotte Grossiord

Recent decades have been characterized by increasing temperatures worldwide, resulting in an exponential climb in vapor pressure deficit (VPD). VPD has been identified as an increasingly important driver of plant functioning in terrestrial biomes including ...

2020

Microfluidic-based linear-optics label-free imager

Demetri Psaltis

Linear optics based nanoscopy previously reached resolution beyond the diffraction limit, illuminating samples in the visible light regime while allowing light to interact with freely moving metallic nanoparticles. However, the hydrodynamics governing the ...

ROYAL SOC CHEMISTRY2020

Linking soil's volatilome to microbes and plant roots highlights the importance of microbes as emitters of belowground volatile signals

Richard Splivallo, Alexandre Buttler, Pierre Rémi Mariotte, Amarante Vitra

Plants and microbes release a plethora of volatiles that act as signals in plant-microbe interactions. Characterizing soil's volatilome and microbiome might shed light on the nature of relevant volatile signals and on their emitters. This hypothesis was te ...

2019

Contactless optical trapping and manipulation of nanoparticles utilizing SIBA mechanism and EDL force

On-chip optical tweezers based on evanescent fields overcome the diffraction limit of the free-space optical tweezers and can be a promising technique for developing lab-on-a-chip devices. While such trapping allows for low-cost and precise manipulation, i ...

2019

Lab-on-a-chip technologies for manipulation and imaging of C. elegans worms and embryos

Li Dong

The nematode Caenorhabditis elegans is an attractive model organism, owing notably to its short life cycle, genetic tractability, and optical transparency facilitating microscopic observation. This thesis deals with the realization of technological tools f ...

EPFL2018

Microfluidic and Electrokinetic Manipulation of Single Cells

Samuel Kilchenmann

Traditional cell assays report on the average results of a cell population. However, a wide range of new tools are being developed for a fundamental understanding of single cell's functionality. Nonetheless, the current tools are either limited in their th ...

EPFL2017

Use of Transient Measurements for Static Real-Time Optimization

Dominique Bonvin, Grégory François, Alejandro Gabriel Marchetti, Tafarel de Avila Ferreira

Modifier adaptation (MA) is a real-time optimization (RTO) method characterized by its ability to enforce plant optimality upon convergence despite the presence of model uncertainty. The approach is based on correcting the available model using gradient es ...

2017

Microfluidic systems for high-throughput and high-content screening using the nematode Caenorhabditis elegans

Martinus Adela Maria Gijs, Thomas Lehnert, Matteo Cornaglia

In a typical high-throughput drug screening (HTS) process, up to millions of chemical compounds are applied to cells cultured in well plates, aiming to find molecules that exhibit a robust dose-response, as evidenced for example by a fluorescence signal. I ...

Royal Soc Chemistry2017

Refraction limit of miniaturized optical systems: a ball-lens example

Hans Peter Herzig, Toralf Scharf, Wilfried Noell, Myun Sik Kim, Roland Andreas Bitterli

We study experimentally and theoretically the electromagnetic field in amplitude and phase behind ball-lenses across a wide range of diameters, ranging from a millimeter scale down to a micrometer. Based on the observation, we study the transition between ...

Optical Society of America2016

System for optical detection and imaging of sub-diffraction-limited nano-objects

Martinus Adela Maria Gijs, Matteo Cornaglia, Hui Yang

Nano-objects (8) with feature size smaller than the classical Abbe's diffraction limit can be optically detected via a microlens (4) array configured in a miniaturized microfluidic device. A hydrophilic microwell (3) array in a hydrophobic layer (2) is fir ...

2016

Piégeage optique résonant et analyse du mouvement de nanoparticules piégées dans des cristaux photoniques à cavités creuses

Mario Lucien Henri Tonin

Optical trapping was used for decades in biotechnology for a broad range of applications. It can be used for remote manipulation, application of pico-Newton forces and even study DNA processes. Nevertheless, optical trapping setups can be cumbersome. In or ...

EPFL2016

Optical Trapping in Microfluidic Channels for Functional and Chemical Analysis of Single Cells

Michael Werner

The physiological properties of cells are typically investigated in ensembles yielding averaged data that mask heterogeneities present in any cell population. Single-cell analysis techniques based on microfluidic "lab on a chip" (LOC) devices have recently ...

EPFL2011

Experimental warming interacts with soil moisture to discriminate plant responses in an ombrotrophic peatland

Alexandre Buttler, Vincent Eric Jules Jassey, Luca Bragazza, Pierre Rémi Mariotte, Bjorn Jozef Maria Robroek

QuestionA better understanding of the response of Sphagnum mosses and associated vascular plants to climate warming is relevant for predicting the carbon balance of peatlands in a warmer world. Open-top chambers (OTCs) have been used to investigate the eff ...

Wiley-Blackwell2015

Microfluidic array cytometer based on refractive optical tweezers for parallel trapping, imaging and sorting of individual cells

René Salathé, Horst Arthur Vogel, Fabrice Merenda, Joachim Piguet, Michael Werner

Analysis of genetic and functional variability in populations of living cells requires experimental techniques capable of monitoring cellular processes such as cell signaling of many single cells in parallel while offering the possibility to sort interesti ...

Royal Society of Chemistry2011

Merging microfluidics and micro-array concepts: from molecular to nematode-based bioassays

Matteo Cornaglia

Essential in biomedical research is the necessity of gathering statistically relevant data about large populations of specific biological entities, e.g. organisms, cells or molecules, while preserving detailed information about each single entity under in ...

EPFL2015