Publications by Alexander Mathis

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MammAlps is a multimodal and multi-view dataset of wildlife behavior monitoring. Nine camera-traps were placed at three monitoring sites in the Swiss National Park, from which we curated over 14 hours of video with audio, 2D segmentation maps and 8.5 hours ...

Understanding behavior requires datasets that capture humans while carrying out complex tasks. The kitchen is an excellent environment for assessing human motor and cognitive function, as many complex actions are naturally exhibited in kitchens from choppi ...

CD4 T cells have been implicated in cancer immunity for their helper functions. Moreover, their direct cytotoxic potential has been shown in some patients with cancer. Here, by mining single-cell RNA-seq datasets, we identified CD4 T cell clusters displayi ...

Here we provide the synthetic spindle datasets of our article "Task-driven neural network models predict neural dynamics of proprioception". It contains the synthetic generated training dataset of simulated muscle spindles during arm passive movements gene ...

The utility of machine learning in understanding the motor system is promising a revolution in how to collect, measure, and analyze data. The field of movement science already elegantly incorporates theory and engineering principles to guide experimental w ...

Here we provide the neural data, activation and predictions for the best models and result dataframes of our article "Task-driven neural network models predict neural dynamics of proprioception". It contains the behavioral and neural experimental data (cu ...

Here we provide the data to run the code provided in github.

Data required to train and test the models in data.zip ~37 GB when uncompressed. This includes: cleaned_smooth: pre-processed data from FLAG3D and PCR dataset, the elbow flexion datasets u ...

############# Contrasting action and posture coding with hierarchical deep neural network models of proprioception, eLife 2023 ############# Authors: Kai J Sandbrink, Pranav Mamidanna, Claudio Michaelis, Matthias Bethge, Mackenzie W Mathis and Alexander ...

Human hands are highly articulated and versatile at handling objects. Jointly estimating the 3D poses of a hand and the object it manipulates from a monocular camera is challenging due to frequent occlusions. Thus, existing methods often rely on intermedia ...

Estimating the pose of multiple animals is a challenging computer vision problem: frequent interactions cause occlusions and complicate the association of detected keypoints to the correct individuals, as well as having highly similar looking animals that ...

Here we provide the data of our article "HOISDF: Constraining 3D Hand-Object Pose Estimation with Global Signed Distance Fields". It contains the rendered images and the segmentation masks that we use to train our model on HO3Dv2 dataset. The overall str ...

Here we provide neural networks weights for the best models in our article "Rethinking pose estimation in crowds: overcoming the detection information-bottleneck and ambiguity", ICCV 2023. Each model has the naming convention "dataset"-"modeltype".pth. Th ...

Here we provide the data of our article "HOISDF: Constraining 3D Hand-Object Pose Estimation with Global Signed Distance Fields". It contains the preprocessed SDF samples. Meanwhile, we also include rendered data for HO3Dv2 here. The overall structure of ...

Alexander Mathis

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MammAlps: A multi-view video behavior monitoring dataset of wild mammals in the Swiss Alps

EPFL-Smart-Kitchen-30 Collected data

Tumor-specific cytolytic CD4 T cells mediate immunity against human cancer

Task-driven neural network models predict neural dynamics of proprioception: Synthetic muscle spindle datasets

Measuring and modeling the motor system with machine learning

Task-driven neural network models predict neural dynamics of proprioception: Experimental data, activations and predictions of neural network models

Data for Deep-learning models of the ascending proprioceptive pathway are subject to illusions

Data for Contrasting action and posture coding with hierarchical deep neural network models of proprioception

HOISDF: Constraining 3D Hand-Object Pose Estimation with Global Signed Distance Fields

Multi-animal pose estimation, identification and tracking with DeepLabCut

Synthetic data (Part 2) for "HOISDF: Constraining 3D Hand-Object Pose Estimation with Global Signed Distance Fields"

Neural and algorithmic bases of odor guided trail following in mice

Tumor-Specific Cytolytic Cd4 T Cells Mediate Protective Immunity Against Human Cancer

Deep learning tools for the analysis of movement, identity and behavior

Scene and animal attributes retrieval from camera trap data with domain-adapted language-vision models

Rethinking pose estimation in crowds: overcoming the detection information bottleneck and ambiguity

Synthetic data (Part 1) for "HOISDF: Constraining 3D Hand-Object Pose Estimation with Global Signed Distance Fields"

Climbing out of the lab: studying motor planning and coarticulation in the climbing gym