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Yu Lin

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Related publications (44)

Page 2 of 3

Study of cell differentiation by phylogenetic analysis using histone modification data

Bernard Moret, Philipp Bucher, Yu Lin, Nishanth Ulhas Nair

Background: In cell differentiation, a cell of a less specialized type becomes one of a more specialized type, even though all cells have the same genome. Transcription factors and epigenetic marks like histone modifications can play a significant role in ...

BioMed Central2014

Bootstrapping phylogenies inferred from rearrangement data

Bernard Moret, Yu Lin, Vaibhav Rajan

Background: Large-scale sequencing of genomes has enabled the inference of phylogenies based on the evolution of genomic architecture, under such events as rearrangements, duplications, and losses. Many evolutionary models and associated algorithms have be ...

BioMed Central2012

TIBA: a tool for phylogeny inference from rearrangement data with bootstrap analysis

Bernard Moret, Yu Lin, Vaibhav Rajan

TIBA is a tool to reconstruct phylogenetic trees from rearrangement data that consist of ordered lists of synteny blocks (or genes), where each synteny block is shared with all of its homologues in the input genomes. The evolution of these synteny blocks, ...

Oxford University Press2012

Efficient generation of energetic ions in multi-ion plasmas by radio-frequency heating

Henri Weisen, Jonathan Marc Philippe Faustin, Yu Lin

We describe a new technique for the efficient generation of high-energy ions with electromagnetic ion cyclotron waves in multi-ion plasmas. The discussed three-ion scenarios are especially suited for strong wave absorption by a very low number of resonant ...

Nature Publishing Group2017

NAND-NOR: A Compact, Fast, and Delay Balanced FPGA Logic Element

Paolo Ienne, Yu Lin, Grace Zgheib

The And-Inverter Cone has been introduced as an alternative logic element to the look-up table in FPGAs, since it improves their performance and resource utilization. However, further analysis of the AIC design showed that it suffers from the delay discrep ...

ACM2017

A New Genomic Evolutionary Model for Rearrangements, Duplications, and Losses That Applies across Eukaryotes and Prokaryotes

Bernard Moret, Yu Lin

Springer-Verlag2010

Sorting genomes with rearrangements and segmental duplications through trajectory graphs

Bernard Moret, Yu Lin, Mingfu Shao

We study the problem of sorting genomes under an evolutionary model that includes genomic rearrangements and segmental duplications. We propose an iterative algorithm to improve any initial evolutionary trajectory between two genomes in terms of parsimony. ...

Biomed Central Ltd2013

Alcator C-Mod: research in support of ITER and steps beyond

Christian Gabriel Theiler, Yu Lin, Peng Xu

This paper presents an overview of recent highlights from research on Alcator C-Mod. Significant progress has been made across all research areas over the last two years, with particular emphasis on divertor physics and power handling, plasmamaterial inter ...

Iop Publishing Ltd2015

Heuristics for the inversion median problem

Bernard Moret, Yu Lin, Krister Swenson, Vaibhav Rajan

2010

A new genomic evolutionary model for rearrangements, duplications, and losses that applies across eukaryotes and prokaryotes

Bernard Moret, Yu Lin

Genomic rearrangements have been studied since the beginnings of modern genetics and models for such rearrangements have been the subject of many papers over the last 10 years. However, none of the extant models can predict the evolution of genomic organiz ...

Mary Ann Liebert2011

Underground Organic-Rich Fluids On Mars: Biotic Vs Abiotic Processes

Yu Lin, Philippe Gillet, Jiangyan Yang

Wiley-Blackwell2013

H And C Isotopes Of C-Grains From Martian Meteorite Nwa 6162

Yu Lin, Philippe Gillet

Wiley-Blackwell2015

Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion

Yu Lin, Mingfu Shao

Computing the edit distance between two genomes under certain operations is a basic problem in the study of genome evolution. The double-cut-and-join (DCJ) model has formed the basis for most algorithmic research on rearrangements over the last few years. ...

Biomed Central Ltd2012

Metal Nodules In El3 And Eh3 Primitive Chondrites: Conglomerates Of Micro Pebble Metals With A Menagerie Of Sulfide Assemblages; Graphite Feathers And Various Sinoite Morphologies, Metal Clasts. No Evidence For Melting

Yu Lin, Philippe Gillet

Wiley-Blackwell2016

Estimating true evolutionary distances under rearrangements, duplications, and losses

Bernard Moret, Yu Lin, Krister Swenson, Vaibhav Rajan

2010

Active and fast particle driven Alfven eigenmodes in Alcator C-Mod

Ambrogio Fasoli, Yu Lin

Alfven eigenmodes (AEs) are studied to assess their stability in high density reactor relevant regimes where T(i)approximate to T-e and as a diagnostic tool. Stable AEs are excited with active magnetohydrodynamics antennas in the range of the expected AE f ...

2005

Phylogenetic Analysis of Cell Types Using Histone Modifications

Bernard Moret, Philipp Bucher, Yu Lin, Nishanth Ulhas Nair

Springer Verlag2013

An exact algorithm to compute the DCJ distance for genomes with duplicate genes

Bernard Moret, Yu Lin, Mingfu Shao

Springer Verlag2014

Maximum likelihood phylogenetic reconstruction from high-resolution whole-genome data and a tree of 68 eukaryotes

Bernard Moret, Yu Lin

2013

An Exact Algorithm to Compute the Double-Cut-and-Join Distance for Genomes with Duplicate Genes

Bernard Moret, Yu Lin, Mingfu Shao

Computing the edit distance between two genomes is a basic problem in the study of genome evolution. The double-cut-and-join (DCJ) model has formed the basis for most algorithmic research on rearrangements over the last few years. The edit distance under t ...

Mary Ann Liebert2015