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Alexandros Stamatakis

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Related publications (14)

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A Rapid Bootstrap Algorithm for the RAxML Web Servers

Jacques Rougemont, Alexandros Stamatakis

Despite recent advances achieved by application of high-performance computing methods and novel algorithmic techniques to maximum likelihood (ML)-based inference programs, the major computational bottleneck still consists in the computation of bootstrap su ...

Taylor and Francis, Oxford2008

A Critical Assessment of Storytelling: Gene Ontology Categories and the Importance of Validating Genomic Scans

Jeffrey David Jensen, Alexandros Stamatakis

In the age of whole-genome population genetics, so-called genomic scan studies often conclude with a long list of putatively selected loci. These lists are then further scrutinized to annotate these regions by gene function, corresponding biological proces ...

Oxford University Press2012

How many bootstrap replicates are necessary?

Bernard Moret, Alexandros Stamatakis

Phylogenetic bootstrapping (BS) is a standard technique for inferring confidence values on phylogenetic trees that is based on reconstructing many trees from minor variations of the input data, trees called replicates. BS is used with all phylogenetic reco ...

2010

A nuclear ribosomal DNA phylogeny of Acer inferred with maximum likelihood, splits graphs, and motif analysis of 606 sequences

Alexandros Stamatakis

2006

Alexandros Stamatakis

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A Rapid Bootstrap Algorithm for the RAxML Web Servers

A Critical Assessment of Storytelling: Gene Ontology Categories and the Importance of Validating Genomic Scans

How many bootstrap replicates are necessary?

A nuclear ribosomal DNA phylogeny of Acer inferred with maximum likelihood, splits graphs, and motif analysis of 606 sequences

Runtime scheduling of dynamic parallelism on accelerator-based multicore systems

Parallel computation of phylogenetic consensus trees

Uncovering hidden phylogenetic consensus in large datasets

How many bootstrap replicates are necessary?

Multiple evolutionary mechanisms drive papillomavirus diversification

Dynamic multigrain parallelization on the Cell broadband engine

Exploring new search algorithms and hardware for phylogenetics: RAxML meets the IBM Cell

AxPcoords and parallel AxParafit: Statistical co-phylogenetic analyses on thousands of taxa

RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L