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Bernard Moret

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Related publications (57)

Page 3 of 3

Estimating true evolutionary distances under rearrangements, duplications, and losses

Bernard Moret, Yu Lin, Krister Swenson, Vaibhav Rajan

2010

Phylogenetic Analysis of Cell Types Using Histone Modifications

Bernard Moret, Philipp Bucher, Yu Lin, Nishanth Ulhas Nair

Springer Verlag2013

An exact algorithm to compute the DCJ distance for genomes with duplicate genes

Bernard Moret, Yu Lin, Mingfu Shao

Springer Verlag2014

Inversion-based genomic signatures

Bernard Moret, Krister Swenson

Background: Reconstructing complete ancestral genomes (at least in terms of their gene inventory and arrangement) is attracting much interest due to the rapidly increasing availability of whole genome sequences. While modest successes have been reported fo ...

2009

Phylogenetic Analysis of Whole Genomes

Springer-Verlag2011

Maximum likelihood phylogenetic reconstruction from high-resolution whole-genome data and a tree of 68 eukaryotes

Bernard Moret, Yu Lin

2013

An Exact Algorithm to Compute the Double-Cut-and-Join Distance for Genomes with Duplicate Genes

Bernard Moret, Yu Lin, Mingfu Shao

Computing the edit distance between two genomes is a basic problem in the study of genome evolution. The double-cut-and-join (DCJ) model has formed the basis for most algorithmic research on rearrangements over the last few years. The edit distance under t ...

Mary Ann Liebert2015

Uncovering hidden phylogenetic consensus in large datasets

Bernard Moret, Alexandros Stamatakis, Krister Swenson

Institute of Electrical and Electronics Engineers2011

Sorting signed permutations by inversions in O(nlogn) time

Bernard Moret, Yu Lin, Krister Swenson, Vaibhav Rajan

The study of genomic inversions (or reversals) has been a mainstay of computational genomics for nearly 20 years. After the initial breakthrough of Hannenhalli and Pevzner, who gave the first polynomial-time algorithm for sorting signed permutations by inv ...

Springer2009

FluReF, an automated flu virus reassortment finder based on phylogenetic trees

Bernard Moret, Alisa Yurovsky

BioMed Central2011

A transcript perspective on evolution

Bernard Moret, Yann Christinat

Springer Verlag2012

Computational Challenges In Comparative Genomics: Gene Family Evolution, Ancestral Genome Reconstruction, And Applications To Human Genetics

World Scientific Publ Co Inc, 687 Hartwell St, Teaneck, NJ 07666 USA2009

How many bootstrap replicates are necessary?

Bernard Moret, Alexandros Stamatakis

Springer2009

Estimating true evolutionary distances under the DCJ model

Bernard Moret, Yu Lin

2008

Uncovering hidden phylogenetic consensus

Bernard Moret, Krister Swenson

Springer2010

Hurdles hardly have to be heeded

Bernard Moret, Yu Lin, Krister Swenson, Vaibhav Rajan

Springer2008

Inferring transcript phylogenies

Bernard Moret, Yann Christinat

BioMed Central2012