Lecture

Mechanobiology: Introduction and Cellular Responses

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In course

ME-480: Mechanobiology: how mechanics regulate life

The objective of this course is to expose students to the fundamentals of mechanobiology. We will highlight the technologies that enable the study of living systems including mechanical manipulation and characterization, along with computational modeling f ...

Description

This lecture introduces the field of mechanobiology, exploring the application of mechanical principles to living organisms. Topics include the history of biomechanics, mechanobiology in hearing, mechanotransduction, and the regulation of cell physiology. The lecture covers the structure and function of proteins, DNA, RNA, and the central dogma of molecular biology. It also delves into the mechanical properties of living tissues, such as linear and nonlinear elasticity, viscoelasticity, poroelasticity, and plasticity. The discussion extends to biopolymer networks, cellular interactions with the extracellular matrix, and models for cytoskeletal filaments and motors. The lecture concludes with an overview of active control over network mechanics, mechanical interactions between cells and the extracellular matrix, and other relevant concepts in mechanobiology.

Instructors (2)

Mahmut Selman Sakar

Expertise robotics, mechanobiology, microtechnology, smart materials, biomedical devices Teaching & PhD PhD Students Lorenzo Francesco John Noseda, Nikita Norkin, Elif Ezgi Inan, Houman Javaheri, Mehdi Ali Gadiri, Julian Leon Raub, Junsun Hwang Past EPFL PhD Students Erik Mailand, Raquel Filipa Penacho Parreira, Murat Kaynak, Lucio Pancaldi-Giubbini, Fazil Emre Uslu, Matthias Rüegg, Ece Özelçi, Emilie Vuille-Dit-Bille Past EPFL PhD Students as codirector Laura Joan Hermans, Sourabh Monnappa Kuppanda Jafri

Alexandre Louis André Persat

Expertise bacterial biophysics and bioengineeringmicrofluidicscellular biomechanics Teaching & PhD PhD Students Jann Lukas Ledergerber, Dea Mariette Müller, Marin Paul Geoffroy Marie Ollagnon, Han-Yi Huang, Alice Pellegrino, Shiro Otaki, Chia-Ni Tsai, Po-Long Hsiao Past EPFL PhD Students Lorenzo Anton-Louis Talà, Xavier Pierrat, Tamara Rossy, Alice Cont, Jeremy Wong, Sourabh Monnappa Kuppanda Jafri, Tania Distler Past EPFL PhD Students as codirector Gabriele Gambardella Courses Fluid mechanics (for SV)

Official source

Related concepts (32)

Protein structure

Protein structure is the three-dimensional arrangement of atoms in an amino acid-chain molecule. Proteins are polymers - specifically polypeptides - formed from sequences of amino acids, which are the monomers of the polymer. A single amino acid monomer may also be called a residue, which indicates a repeating unit of a polymer. Proteins form by amino acids undergoing condensation reactions, in which the amino acids lose one water molecule per reaction in order to attach to one another with a peptide bond.

Protein tertiary structure

Protein tertiary structure is the three dimensional shape of a protein. The tertiary structure will have a single polypeptide chain "backbone" with one or more protein secondary structures, the protein domains. Amino acid side chains may interact and bond in a number of ways. The interactions and bonds of side chains within a particular protein determine its tertiary structure. The protein tertiary structure is defined by its atomic coordinates. These coordinates may refer either to a protein domain or to the entire tertiary structure.

Protein secondary structure

Protein secondary structure is the local spatial conformation of the polypeptide backbone excluding the side chains. The two most common secondary structural elements are alpha helices and beta sheets, though beta turns and omega loops occur as well. Secondary structure elements typically spontaneously form as an intermediate before the protein folds into its three dimensional tertiary structure. Secondary structure is formally defined by the pattern of hydrogen bonds between the amino hydrogen and carboxyl oxygen atoms in the peptide backbone.

Protein quaternary structure

Protein quaternary structure is the fourth (and highest) classification level of protein structure. Protein quaternary structure refers to the structure of proteins which are themselves composed of two or more smaller protein chains (also referred to as subunits). Protein quaternary structure describes the number and arrangement of multiple folded protein subunits in a multi-subunit complex. It includes organizations from simple dimers to large homooligomers and complexes with defined or variable numbers of subunits.

Protein primary structure

Protein primary structure is the linear sequence of amino acids in a peptide or protein. By convention, the primary structure of a protein is reported starting from the amino-terminal (N) end to the carboxyl-terminal (C) end. Protein biosynthesis is most commonly performed by ribosomes in cells. Peptides can also be synthesized in the laboratory. Protein primary structures can be directly sequenced, or inferred from DNA sequencess.

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