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Concept

Graph embedding

Related publications (30)

Towards improving full-length ribosome density prediction by bridging sequence and graph-based representations

Pierre Vandergheynst, Felix Naef, Cédric Gobet, Francesco Craighero, Mohan Vamsi Nallapareddy

Translation elongation plays an important role in regulating protein concentrations in the cell, and dysregulation of this process has been linked to several human diseases. In this study, we use data from ribo-seq experiments to model ribosome densities, ...

PMLR2024

Graph-based approximate message passing iterations

Raphaël Jean Berthier

Approximate message passing (AMP) algorithms have become an important element of high-dimensional statistical inference, mostly due to their adaptability and concentration properties, the state evolution (SE) equations. This is demonstrated by the growing ...

Oxford University Press2023

GRAMM: Fast CGRA Application Mapping Based on A Heuristic for Finding Graph Minors

Mirjana Stojilovic

A graph H is a minor of a second graph G if G can be transformed into H by two operations: 1) deleting nodes and/or edges, or 2) contracting edges. Coarse-grained reconfigurable array (CGRA) application mapping is closely related to the graph minor problem ...

Los Alamitos2023

Multi-IVE: Privacy Enhancement of Multiple Soft-Biometrics in Face Embeddings

Sébastien Marcel, Hatef Otroshi Shahreza

This study focuses on the protection of soft-biometric attributes related to the demographic information of individuals that can be extracted from compact representations of face images, called embeddings. We consider a state-ofthe-art technology for soft- ...

IEEE COMPUTER SOC2023

Equivariant Neural Architectures for Representing and Generating Graphs

Clément Arthur Yvon Vignac

Graph machine learning offers a powerful framework with natural applications in scientific fields such as chemistry, biology and material sciences. By representing data as a graph, we encode the prior knowledge that the data is composed of a set of entiti ...

EPFL2023

Scalable maximal subgraph mining with backbone-preserving graph convolutions

Karl Aberer, Thành Tâm Nguyên, Quoc Viet Hung Nguyen, Thanh Trung Huynh

Maximal subgraph mining is increasingly important in various domains, including bioinformatics, genomics, and chemistry, as it helps identify common characteristics among a set of graphs and enables their classification into different categories. Existing ...

ELSEVIER SCIENCE INC2023

Unsupervised Graph Representation Learning with Cluster-aware Self-training and Refining

Yichen Xu, Qiang Liu

Unsupervised graph representation learning aims to learn low-dimensional node embeddings without supervision while preserving graph topological structures and node attributive features. Previous Graph Neural Networks (GNN) require a large number of labeled ...

Assoc Computing Machinery2023

Dimensionality reduction of time-series data, and systems and devices that use the resultant embeddings

Mackenzie Mathis, Steffen Schneider

Methods, systems, and apparatus, including computer programs encoded on a computer storage medium, for dimensionality reduction of time-series using contrastive learning. A method can include receiving multidimensional input time series data that includes ...

2023

Graph Embedding for Retrieval

Chi Thang Duong

Information retrieval (IR) systems such as search engines are important for people to find what they need among the tremendous amount of data available in their organization or on the Internet. These IR systems enable users to search in a large data collec ...

EPFL2022

A Versatile Mapping Approach for Technology Mapping and Graph Optimization

Giovanni De Micheli, Heinz Riener, Alessandro Tempia Calvino, Akash Kumar

This paper proposes a versatile mapping approach that has three objectives: i) it can map from one technology-independent graph representation to another; ii) it can map to a cell library; iii) it supports logic rewriting. The method is cut-based, mitigate ...

IEEE2022

Face Reconstruction Fromdeep Facial Embeddings Using A Convolutional Neural Network

Sébastien Marcel, Hatef Otroshi Shahreza

State-of-the-art (SOTA) face recognition systems generally use deep convolutional neural networks (CNNs) to extract deep features, called embeddings, from face images. The face embeddings are stored in the system's database and are used for recognition of ...

IEEE2022

Graph signal processing tailored for subgraph focus and community structure

Miljan Petrovic

Community structure in graph-modeled data appears in a range of disciplines that comprise network science. Its importance relies on the influence it bears on other properties of graphs such as resilience, or prediction of missing connections. Nevertheless, ...

EPFL2022

Nature vs. Nurture: Feature vs. Structure for Graph Neural Networks

Karl Aberer, Quoc Viet Hung Nguyen, Thành Tâm Nguyên, Chi Thang Duong

Graph neural networks take node features and graph structure as input to build representations for nodes and graphs. While there are a lot of focus on GNN models, understanding the impact of node features and graph structure to GNN performance has received ...

ELSEVIER2022

Graph Representation Learning with Optimal Transport: Analysis and Applications

Effrosyni Simou

In several machine learning settings, the data of interest are well described by graphs. Examples include data pertaining to transportation networks or social networks. Further, biological data, such as proteins or molecules, lend themselves well to graph- ...

EPFL2022

Random walks and forbidden minors III: poly(d epsilon(-1))-time partition oracles for minor-free graph classes

Akash Kumar

Consider the family of bounded degree graphs in any minor-closed family (such as planar graphs). Let d be the degree bound and n be the number of vertices of such a graph. Graphs in these classes have hyperfinite decompositions, where, one removes a small ...

IEEE COMPUTER SOC2022

Linearization and Identification of Multiple-Attractor Dynamical Systems through Laplacian Eigenmaps

Aude Billard, Bernardo Fichera

Dynamical Systems (DS) are fundamental to the modeling and understanding time evolving phenomena, and have application in physics, biology and control. As determining an analytical description of the dynamics is often difficult, data-driven approaches are ...

Microtome Publishing2022

Efficient and Effective Multi-Modal Queries Through Heterogeneous Network Embedding

Karl Aberer, Quoc Viet Hung Nguyen, Thành Tâm Nguyên, Chi Thang Duong, Thanh Trung Huynh

The heterogeneity of today's Web sources requires information retrieval (IR) systems to handle multi-modal queries. Such queries define a user's information needs by different data modalities, such as keywords, hashtags, user profiles, and other media. Rec ...

IEEE COMPUTER SOC2022

Polymer Translocation through Nanometer Pores

Maria-Alexandra Paun

In this paper the loaded polymer transport and its escape via a nanometer size aperture, virtually by nanomembrane, the polymer being moved by an exterior electrostatic field, has been studied. Assuming a linear dependency of the friction coefficient on th ...

MDPI2022

A systematic review of empirical studies using log data from open-ended learning environments to measure science and engineering practices

Engin Walter Bumbacher

Technology-based, open-ended learning environments (OELEs) can capture detailed information of students' interactions as they work through a task or solve a problem embedded in the environment. This information, in the form of log data, has the potential t ...

WILEY2023

Recent advances in trajectory inference from single-cell omics data

Bart Deplancke, Wouter Jozef L Saelens

Trajectory inference methods have emerged as a novel class of single-cell bioinformatics tools to study cellular dynamics at unprecedented resolution. Initial development focused on adapting methods based on clustering or graph traversal, but recent advanc ...

ELSEVIER2021