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Concept

Neighbor joining

Related publications (5)

Sketches, metrics and fast algorithms

Navid Nouri

As it has become easier and cheaper to collect big datasets in the last few decades, designing efficient and low-cost algorithms for these datasets has attracted unprecedented attention. However, in most applications, even storing datasets as acquired has ...

EPFL2022

Taxonomic revision of the Eudicella White, 1839 complex, with description of three new subgenera

Michele De Palma

Morphological and DNA barcoding analysis of representative taxa in the Eudicella White complex identified five distinct subgenera, three of which are established herein: Eudicella (Coelorrhinella) n. subg., Eudicella (Aneurhina) n. subg., and Eudicella (Ce ...

2021

On Application Of Non-Negative Matrix Factorization for Ad Hoc Microphone Array Calibration from Incomplete Noisy Distances

Hervé Bourlard, Afsaneh Asaei, Mohammadjavad Taghizadeh

We propose to use non-negative matrix factorization (NMF) to estimate the unknown pairwise distances and reconstruct a distance matrix for microphone array position calibration. We develop new multiplicative update rules for NMF with incomplete input matri ...

2015

A metric for phylogenetic trees based on matching

Bernard Moret, Yu Lin, Vaibhav Rajan

Comparing two or more phylogenetic trees is a fundamental task in computational biology. The simplest outcome of such a comparison is a pairwise measure of similarity, dissimilarity, or distance. A large number of such measures have been proposed, but so t ...

Springer Verlag2011

Automated Reconstruction of Dendritic and Axonal Trees by Global Optimization with Geometric Priors

Pascal Fua, Engin Türetken, Germán González Serrano

We present a novel probabilistic approach to fully automated delineation of tree structures in noisy 2D images and 3D image stacks. Unlike earlier methods that rely mostly on local evidence, ours builds a set of candidate trees over many different subsets ...

Humana Press2011